CI01000046_05315583_05316990


Basic Information

Item Value
gene id CI01000046_05315583_05316990
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5315185 ~ 5317089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_05315583_05316990.mRNA
AAATAAAAGAAAGAAAAAAAAAAAAGCCTCCCCTGCCCAGTCCTCAGACCAAAAAAAAAAAAAAAATAAACCACTGGATTCAGGGTTCAAGAAAACGATTAACGTTTTGTTAAGATGAAAAAAATAAATATTTGAGAATTTCCAGGATAACATAAACCAGTGGGTGCATAAACTTCAGGAAGACCCAAGGCCCAAAATAACAAACAAAATGGGTAATAAACAAAAATATCCAAAATAACTTCCCTCAAAATATCAAAATCAAAATACAACAAATTACCCTTACTACACTAACAAAAACAGAGCGAACTTAATTTCAAAAGAAAAGGGCAGGTCAACCCTACAGAACACCATCACTGTAAAGAAAAGCAAATATATAACAGAATGGAAAATAATGCACAATGTGTAATGGTGGTCTGGTGGCTGGAGAGTGCGACCGTCCTGAAGTCGCAACAGCTCAACTGCAGGAAGAGGAAGAGATGGTTTTAAACCCTCATTCAATCGTCGTAATCCAATCCCGGCAGAGAGAGGGTGGAAATCACTTTGACCAGTATGAGGAAGGTCAGTTGGAGTTGGAACAGGCCTCTTTGGACAAGCCCATAGAACCGATGAGTGAGGATGGATGTGCTTGTGTGGATGTTAGATGGTATTTCTGAATAAAATGAGTTTTTGACATTTGTTTGAAATGTGAAGTGGATGGCACACTGTGAAAAAGGTAAAAGATAGAAACAGACATGCACAGTCACTCATGTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_05315583_05316990.mRNA True 752 mRNA 0.38 3 5315185 5317089

Neighbor

gene id symbol gene type direction distance location
CI01000046_05305482_05310465 NA coding upstream 4706 5305193 ~ 5310479 (+)
CI01000046_05279865_05281709 BAXA, BAX coding upstream 33058 5279865 ~ 5282127 (+)
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 434516 4861221 ~ 4880669 (+)
CI01000046_04841558_04852685 NA coding upstream 462009 4841558 ~ 4853176 (+)
CI01000046_04811748_04819011 ZNF281A coding upstream 495817 4811610 ~ 4819368 (+)
CI01000046_05335886_05341205 GPATCH8 coding downstream 18797 5335886 ~ 5341888 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 74894 5391983 ~ 5402075 (+)
CI01000046_05481838_05537970 NA coding downstream 164749 5481838 ~ 5538151 (+)
CI01000046_05562155_05568637 MLX coding downstream 244868 5561957 ~ 5569463 (+)
CI01000046_05635252_05642052 DLX4A coding downstream 316682 5633771 ~ 5642292 (+)
G197372 NA non-coding upstream 20778 5291971 ~ 5294407 (+)
G197352 NA non-coding upstream 38732 5259318 ~ 5276453 (+)
G197393 NA non-coding upstream 58403 5249761 ~ 5256782 (+)
G197457 NA non-coding upstream 66603 5248350 ~ 5248582 (+)
G197456 NA non-coding upstream 67421 5247299 ~ 5247764 (+)
G197383 NA non-coding downstream 64032 5381121 ~ 5384299 (+)
G197399 NA non-coding downstream 69381 5386470 ~ 5386716 (+)
G197466 NA non-coding downstream 74033 5391122 ~ 5391352 (+)
G197386 NA non-coding downstream 114366 5431455 ~ 5769358 (+)
G197410 NA non-coding downstream 270092 5587181 ~ 5625506 (+)
G196869 NA other upstream 893498 4415530 ~ 4421687 (+)
G197121 NA other upstream 943755 4371011 ~ 4371430 (+)
G197055 NA other upstream 1165405 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1369685 3943794 ~ 3945500 (+)
G197528 NA other downstream 409032 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1502849 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026627 gpatch8 coding NC_007114.7 CM002887.2 37662444 ~ 37699992 (-)