CI01000046_06553680_06556870


Basic Information

Item Value
gene id CI01000046_06553680_06556870
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6552326 ~ 6557725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_06553680_06556870.mRNA
TTATATATGGGAAGCACTGGTATCTAGCATGCAAAGCTTGAGTGCTTCTCTTTAATTCTCAAAATATGACCAGTAAAACTGGTTTTGCTAGAATAACCTTGGTGTTCTCATCACACTCCATTTCCACCACTTAAAACTGAGAAATCAATACATTTGTCCATGTCAGTGCTGCTTCAAATATATTTCAACATTATTATAAATAATTCACACATAGATGAATGAATATTTAAAAAAATCACGCTCTTTTGAGCATCATACGCATGTATAGAATGTTTGAGAATGCCTCTGATTACGGCAATAAATAATACAAATTATAATTTTAATGTTAATTAAAAATTTTCTAGTATCCTTTCCAATTTCACTAGTAACTATTCATTACATTTTAGTACTTATTCATTAGATACTAGCACTTATACCAATACAATACTAGTAGCTATTCCATTAACTGCTAGCACTTATTTTTTACATAGGCACTTATTTATTTTACTACTAGTCATTAGTTTTAATAGTACTTATTAAATAGACACTAATACTTAATCATTATACATGGCACGTAAAAAAGGCAATTGTGACTAGCAAGACAAGTAATATAACTAATGATATTCAGATTAGATGCTAGTAGGGTCTCATAAATAAGTACAAGTATCTAGTAAATAAGTACTAGTATAGGAGGACTAAATACTAGTAACTATTGAGAGAGTTTCTATACCTACAAAAAGTACTAGTACCAAATAAAAAGTTACTAAACTGGAATTGGCATACTAGTTGAAAGTGAGATCTAAACCACACATTCCCAGAAAATTAGATGTGTTAATTTATTTTGAAACTATGAAACTTACTTGTTACTTTTGTGATAATGACTAGAAAAGTATTAAGTTACTAGACCATTTGAAAATGATAAATATACGTTTTTAAAAAGTTAGAGTAACATCAACACATATTAGTTAACTTAAACTAAAGGAATGAACCATGACGGATGTCATACTGTGATGGCCAAAACTGCTGTCTAGGTAGTCAGCTTACTATGTTTTGAGACAGCTTTAGTTTTGTCTACATACCCGTCCAGTGTGTGTGTGCTCGTCCTGATTGCGTAACTCGAAAGACTCTTCCTCCTCTTTCTCTCCATGATCCCGAGCCAGCAAACTGAAGCCTTGTCTGCAGCACACAAGCCACCAAAGTCCCTGCAAAGGCATTCAAATCACGGCGTGTCGTCCAGTCTCTATCCGTAAATGTCCAGTGATGTCCACCGTCCCGGTGCTGTCGTGCAGATGGGACAGATGGAGGATGTCTAGTCGCATGAATTGGACTGATTCAAGAGAATAAACTCCTCGATTTCGGCTGGGACTACTGAGAAATGGCGCGTTTTATCACACGGGGTATATCCAGATACGTGTCCAACTTCAGAAAAAGACTGATAGAAGACTTTGATCCCACGGTAGTTGTTATACATAAGAGTTATAAGAGTCCTTGTCTGACTCCAGACTATCATGATGTAATCACAGAAGGGTTATCTACTTTGAATGGCAAAGTGAAATTCGGCTTCTATTATTTGGTTAGTGCTGGAACGTGGAGACTGTGCAGTTGCATTAACAAATGGACTCCTTTATTCCAGGAAACTCCTGTCACGAGAGGCTCTGAAGAGAGGGAGACAGACAGAGAAAGAGGGGAGAGGCCTCACACAGAATCCAGCTCGCTCATGTACACCCATAAATCACGCTATCAAAAAGCACACCAAACACACTCTTGCTCGAGCATAAGCACGCCGATGACACATGATATTTTTCAGGGCCCCTCTGTGCCTGCGCTCTCTTCGCTCTCGCTCTCTCCCTATGCCTTCATTTCCTCTCGTTTGCTCTGCTCTGCTCTCTGCTGACTCTCTTCACACATTTATCATTCCACAAGCTGGCCCTGGTGTTTGTCTTTAAGTCTGCCTGTGGCTTTACCAAACACTTACGCACACACACTCGAGCAGGGTATAGCGTGCTGTCCAGTGAAAACCCCCTGCTTGGCATCTCTCTTTCAGTCTCTACCTCGTCCTTTCTCTCTCTCTCTCTAATATATCACCGTATCATTTTCCTCACGGCTTATAATTCTGCTTCTCTCTCTTCTCATCTTCCTTGTCATGCCGCGTCAGACCTGCCTCCCACCTGACCTGCTCCTGGAACAGATGGTTTATTTTTAGAGTGCTCTTTCTTTCTCCCTCTTTTTCACTCTCTCTGCCCACGCTAAGAAGAAAAAGGGAGTTTTGTGTCTATATATGGCTTGTGAGAGAGTGAGGTTTTCAAGAAAAAACAGACTGTCATTATCACACCCATCTTTTGTCTCTGAAGACAAGGGAGTGAGAGGAATTTAACCACACTGATGTTTTCAGTTTTATGTCTCATTTTCACAAAACAAACATTAAATCTCCTTGTGGAAGCCTTTCTTTCGGTTTTTGGTCTTGATGCCACAGTCCGTTATGCCTCCACATACTCTCATCTGTTTAAATGAGTTTTTTTCAGGGTTTTTTTTTTGCTATATTGAATTGGTCTCACTCATACTGTAGTAACAGCAATACTGACATTACTGCATACTGTTTAACTCTCCTAAACTTCTCAAAAAATGGTCACACCTCGGGTGTTTCTACCAGGAACAGTAAGAGTGTAACTTTTTTTTTTTTATGAAAAGATATAATGCTAATTTCCCTGAAGCAGTAACATTAAAATTAATTTAAATTCCATGATTTAAA

Function

NR:

description
hypothetical protein cypCar_00019043

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_06553680_06556870.mRNA True 2728 mRNA 0.38 4 6552326 6557725

Neighbor

gene id symbol gene type direction distance location
CI01000046_06489840_06506540 TUBG1, TUBG1.L, TUBG2 coding upstream 44719 6489620 ~ 6507607 (+)
CI01000046_06465424_06470835 SCPEP1 coding upstream 81332 6465424 ~ 6470994 (+)
CI01000046_06362326_06364947 NA coding upstream 187242 6361790 ~ 6371457 (+)
CI01000046_06330849_06347081 CRLF3 coding upstream 204947 6330849 ~ 6347379 (+)
CI01000046_06202182_06214539 TRAF7.S, TRAF7 coding upstream 337766 6202182 ~ 6214560 (+)
CI01000046_06586111_06594100 CNTNAP1 coding downstream 28386 6586111 ~ 6594182 (+)
CI01000046_06605188_06611590 SLC16A6B coding downstream 47463 6605188 ~ 6611714 (+)
CI01000046_06617493_06617792 NA coding downstream 59768 6617493 ~ 6618531 (+)
CI01000046_06653842_06661599 NA coding downstream 96117 6653842 ~ 6661648 (+)
CI01000046_06754054_06769901 NA coding downstream 196329 6754054 ~ 6770272 (+)
G197721 NA non-coding upstream 69328 6482106 ~ 6482998 (+)
G197718 NA non-coding upstream 72993 6478948 ~ 6479333 (+)
G197719 NA non-coding upstream 75615 6476302 ~ 6476711 (+)
G197717 NA non-coding upstream 83443 6468501 ~ 6468883 (+)
G197702 NA non-coding upstream 122691 6427844 ~ 6429635 (+)
G197822 NA non-coding downstream 11875 6569600 ~ 6569867 (+)
G197824 NA non-coding downstream 13610 6571335 ~ 6571550 (+)
G197826 NA non-coding downstream 16839 6574564 ~ 6574773 (+)
G197827 NA non-coding downstream 17804 6575529 ~ 6575797 (+)
G197755 NA non-coding downstream 115935 6673660 ~ 6675496 (+)
G197528 NA other upstream 809642 5726121 ~ 5742684 (+)
G197352 NA other upstream 1275873 5259318 ~ 5276453 (+)
G196869 NA other upstream 2130639 4415530 ~ 4421687 (+)
G197121 NA other upstream 2180896 4371011 ~ 4371430 (+)
G197055 NA other upstream 2402546 4149423 ~ 4149780 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 262213 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location