XLOC_009381 (etv1)


Basic Information

Item Value
gene id XLOC_009381
gene name etv1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 34172371 ~ 34214440 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018445
GAGATGTGTGTTCTCATAAATAAACACCTTATAATTGCAATATCAGTTGTGCACATTTTAATGAATTTGGCAGTTGATTGACGGCTGGAAGTCTGAGGACAGTGGCAGCCAATGGGAAGCGGGGCTCCGGCTGTTTGGGAAGGGAGGCCCCTGGAGCAGCAGACGGCGAAGCTGAGCGCGGAGAACAGACACGAGCGTCCGGTGAAACGTCCGTCAATGAATCCGGTGCGTTAAGTGAGGGTGTGGAGAGAAAGATGTGTTTGTGACCGGAGCTCGCATCATTAAATCGCTTCATTAAATCGCTGAATCTCCTGTTCTGATCGGACGGCGCGCGCTCACGGTCCAGACGCGGCAGAATGGACGGACTTCACGACCAACAAGTGCCTTTTATAAAGTCTCATAATCCTCGGGGAAAGACGTCCGGCACGAGACCAGCAAAGgacagaaaaagaaaattcattAACTCTGACCTGGCGCTGGACACTGAGGagcTGTTTCAAGATCTTAGTCAACTTCAGGAGACCTGGCTCGCCGAAGCTCAAGTTCCTGATAATGACGAGCAGTTTGTTCCAGACTTTCAGAGTGAAAACTTGGGGCTCCACGGGCTGCAGTTGAGGCTGAAGCGAGAGCCTCACAGTCCCTGTGCTGATCTGGGCTCAGCCTGCAGTCAGGAGAGGCCCTTCAGACTCCACTATGGGGAGAAGTGCCTCTATAAcatcagTGCCTACGAGCAGAAGCATCCGTCGGGAATGAAGGCCTCCAGCCCTGTGTCGACCCCCTGCAGCACCCCTGTGTCCCCTGGACAGCATGTGTCTCCCACTGCTGCCCCGACCCCCAAACCAGAGCGGACGTACCCACACCTCGCACCCCCACAGCCCCTGCCCGACAGTGCATATCCCATAGACCACAGATTCCGCCGGCAGTTGTCGGAGCCCTGTCATTCGTTCCCCTCTCCTTCAATGTCCCGGGACGGACGGCCCATGTACCATCGGCAGATGTCAGAGCCCAGCATCCCCTTCCCTCCTCAGGGCTTCAAGCAGGAGTACGTGGACCCCCTGTTCGAGCATCCGGCCATGATGGGGGCGCCGCTCCCCCAGCCGTACACACACTCCATGATGATCAAACAAGAGCCGCGCGACTTCACCTACGACTCAGAAGTGCCTAGCTGTCACTCTGTTTATCTCAGACAAGAGGGATACCTGGCACACAGTAACAGAACTGAAGGCTGTATGTTTGACAAAGTTGCAAGGCACTTCTATGATGACACTTGTGTGGTACCGGAGAAGGCGGAGGGTGACATAAAGCAGGAGGCGGGGCTTTACCGTGAAGGGCCGACCTATCAGAGACGAGGCTCTCTGCAGCTCTGGCAGTTTCTAGTGGCTCTGCTGGACGATCCCTCAAACTCACATTTCATCGCGTGGACCGGCCGGGGCATGGAGTTTAAACTCATTGAGCCTGAGGAGGTGGCGCGACGTTGGGGAATCCAAAAGAATCGACCCGCCATGAACTACGACAAACTCAGCAGATCGCTGCGCTACTACTATGAAAAAGGCATCATGCAAAAGGTGGCAGGCGAGAGATACGTATACAAGTTTGTCTGTGACCCCGAGGCTCTGTTCTCCATGGCCTTCCCCGACAATCAGCGTCCCGTGCTGAAAACCGACCTGGAGCGACAGATCAACGAGGAGGACACCGTCCCGCTGTCGCACTTTGATGAAAACATGGCCTACATTCAAGAGGGAGGATACTGTAACCCACACCCATACAACGAGGCCTATGTCTACTGAAAAAACAGTCATTCCCCAGGACAAAAGACAGCACTTTATGGACAGATGGCAGTGTGTAAACCTACAAACGTACTGGTGTAGTTGCGTTAGATGCtcctttggtgttttttttttttttttttggtttgttttggttgttgCTATTGAAGGGGATTGGGCGATTCAGCATGCCGTTTTCCAACAGCGAAAGACTCTCAAAATGGACAGAGGATTCAAACTATTTAGACGGAGAAATCCTAACCTCTTTTACCATCAGAACTCTTCGGATTGTTTGTGGAGCACTTTGTTATTTTCGCAAATTTGTTGTGGGTTTTTTCCCCTCTTTCCTCCCTTGGTGTCAATTTGAGTAAAGAATACAGTGTATGGAAATAAAAACTCTCAAACGCAAAGTAAAATGAGCACATTagtgaccctggatcacaaaaccagtcttatgtGGCACAGATATTCAGCTTATTTTTGACATACacagatatttattttttgccgCAGCCcgtttttggcttgagactttcAGTGTCATTCACTTACACTgaattttagatgttaaaaacagcttaatATGCTCCTCGATGCTGCAAGCTGAcggtttattattttattattctaacttttatgtatagtcatgaacaaaCCTGTAACGCATGCACATCCGCCTTGTATAATACGGTCAATACCAGTGTTggcagatgtagctgactgattccagaaTAAAGCTATCAAAAATCTGCCGAAATACAAAAACAAGCGCCCAGATATCTGAAGGTTGTTGTTAAACCGCCCAATTTTTCTCTACCCCCCTATGTGATTGTTTACTCACACAATCAAATTTAAAACCGCCCAACCTGGCAACACTGAACCCCTTTACATATTGACTACTGTATTGATCAAAGTTTCCATTAAacttgtcctaaaactattgaataaCAATCATTCTTGTCTCAGAAAAATGTTTttgatccatttcaaatgttgactactatatttTTTGACAATAACCCAAATACACTGTACTAATTTCAAagttatagatttttattttatgccaaaataatttaaatattatgtaaagATAATATCCCATTAGGCGTCGCAGTTGGTAGTGCAGTCGCCtcttagcaagaaggtcgctggttcgagcctccgggtgctccggtttcccccacagtccaaagaaatgcagtacaggtgaattgggtaggctaaattgtccgtagtgtatgagtgtgagtaagTGTTTATGGAtcttttccagagatgggttgcagctggaagggcatccgctgtgtaaaacatatgctggatatgttagcggttcattcccctgtggcggagggactaagccaaaaagaaaatgaatgaatgaatgaatcaatatctCATGAGGATGTTTAATAAATTTCTTGCCAAAAGCCGTTATCTTAatactttaatttttaaatgttaaatagtaGTTGTTTCTTGACCAAACATTGTCAGATCATTCTCAAGGGAGAGCTTATTGATTCAGATTTCAGATTATGTAAAAATCTCAATTTCAGGAAATTGACccttaagactggttttgtggtcacatTTGGTCAGAAAAATAGCCTTTAGGCATGCTTTTCTGtccataaaataatgaaatacaacaaaacatgttaaaatgtagTCCACTAATATTGGCACCTTTGATAAATATGACCACAGATGCTGTAAAAATGTTgccttccacacaattccttcatgttgtcccaacagaaaTTGAGTTATCTTcattatttaacaaaatttaagtggattgaacttgcaaaaaactcaaaaaaaatgcAAGAATTGAGTTTATTCAGCTTATTTGAAGTAAGATGTTTTAACAGAGAGCAAAAATGATTTTGCTCAAGATATTAACATAAATAACTGCCCTCATTAAGAATTAAAGATGAGCAAACACGTCACGATTTTTATCAAAATACGAATAGCTTTGTTAAATATAAGTGTCACAATTATGCACCTATGAACTCAAATAACCGAAATATTTACAAAGAATATCTTTACTCATAGctgtcacggtggcgcagagggtagcacgatcgcctcaaagcaagatcactggtttgagtcccggtgcggagtttgcatgttctccccatgtctgcgtgggttttctctcgatgctctggtttcccccacagtccaaagacatgcaatataggtgaattgaataagctaaattggctgtagtgtatgtgtgtgaatgcaagagtgcatgggtgtttcaaAGTGTTTTGTagtgtctggaagggcatccattgcgtaaaacgtgcaggataagttggcggttcattccactgtggtgacccctgattaataaagggaccaagacaaaaagaaaattaatgaatgaatctttaCTAATTTCATTaggaaattatttaaagaatggcagaaatttgagaaaacaataatgaaattgttaaattattattattattattacacaaaaaaaacacgAGCTCCTTTAGTTTTGTTCTTTGCATTTTTAGAAAAAGatcaaacaataataatgaaataatacattttgatcatATCAACAATGGGTGCCAATATTATTGAgggtcactgttttttttttgggatgaGATATTCACTAATATCCAAGTTATACccctatataattttttttgcattccTTCGTAAtgtattaaaaagcataaatgaaaaaaaaaaaatcccattacCGCATGATTTCGTAAAACTGCtccaattttgtttgtttgtttacttatccCCCGTCAAAGTCTAAATCTGTATACTTCTGTAACAACACCATCTTTCACTGAAAAGCGCCTATAGATATCCAATAGTTCTCTTCAGACCGATCTTGTGCAAGGTGCGAGCTTCACACATTTCTATGATTAGAGTGACAAATTGCTTTTTTATTAGGGAAAAAAAGTGGATGTTGGTCCATTATCGCTCTCCCATATGccatttttgaaaatataaaccATGTATATTCAGGTTGATGCACCTCGATGCTGCTTTTCGTGTAAATTTAGTCACGTATGATCAGACGGCAGCTATGCCCTGCAGTACGTCCATTGTTGTTttctcattctttttttttttttacatggaaaaaaacatcagtgtttattgaatgtaaaaaatatatacataattgcGAAGGGAATGGCAATAGCTACACTTCTGTAATAAAATAGTGTTGAAATACAACTGGGTTGTTTTGAAGCGTGCATTTTTGTTAATCTTTGGGCCATATTTTAATGACAAGCAAGCAAATAAGCAGTAGTTCATACATTTATTCAGGTTTCAGATCCATATTAAACTGGCAGAAATAAGATTtgaccttttttatttcattatgctGAATTTTACTGTAACGTTGCTTGCcaaagttgtttttttatatgtatctgtctattttatgtgttttttttttaattcattttcatttagatGTTCAAAGAGAAATGTTAAGATTTCAGTGTAAATCGTCTTTCCCGGCTCAAATTCAAGTAATTTTGTTATGTATTTctgtcatatttgtttatttattcatttatttatttattttataaatgtgtgtacaaagcttttgatcattttatttatcaaaaattcAGTTTACTTATTTTGGCACATCAaattcaactaaataaaaatgagaacTATTCCCTTGTCAACAGAAATAaaaggtgtttatttatttatttaattatttaatttaatttctgtcaaGGTTTAATAAAATTTCAAGCAACAAAAATGGTTTTAGTTTAATGGttttagtttataaaataaaattattaaattataaaaggTGCTGCTGTCAAAATGCTGCCCACAGAAAATCTGATTGCCATTTAGGGAACCAACAAAACAATCATCTGTatgatttcaaatattttattttttttttcatttgtttgttttaacttgTGCAGTTTTCTAAATATCAAtgtactttatttaaatatttaaaaatgcatttttattttaacatgattACATTTTGGTCAATCATGTATTTCCgcatagtttatttaatttttcttatttGAATTGACAAATTTTTGGTGTTAAAATGTTTgacaaagtaacttttattgatatttttgctTACTTTAAAATGATacactgactacatttacatggacatcagtaatcaaattatttgccttaatctgaataagacaataatatgattgaaGTTGCTtcttgaatgtttctttcatgatccagTTTTACGTTACAACACATAGTTTGATTAATGCCATTGCGTCACCGCGCTATCCacgtttcatgtaattttgggtgtttcattcttaatttgtcgactttaactgcagtttgccactttcactttcattggGAATATTTCATGCAAGCCtccaagatattggatgcgagtatgaactgctggaagagtgttgttttaatggaatttgataaggCAGAATGGGAGAAAAAACATCTGTTTTTCGCTGTGTTTGTCTGGGGTaatgactcggtaggtgcaaagTGTCAAACAGCCCTGTGCGTATAAAATATCCTgtcagtgaaaatcctacacgacagtaatattaaggtgtttacatgtctgtactggactttaataatgcgactaaaatcgaaAAGCATCTTGATTTGATTTCTGTTATATTCGATTATCGATTATCACCTTAATCGGATTACATTcatcaaaaatggctgtttacatggtggactcttacccagagtattgtcttaatcgtctTAAAATgcgattattggtgtccatgtaaacatactcactgttGGTAAAAATATGGCTCA
>TCONS_00018446
GACCGGAGCTCGCATCATTAAATCGCTTCATTAAATCGCTGAATCTCCTGTTCTGATCGGACGGCGCGCGCTCACGGTCCAGACGCGGCAGAATGGACGGACTTCACGACCAACAAGTGCCTTTTATAAAGTCTCATAATCCTCGGGGAAAGACGTCCGGCACGAGACCAGCAAAGgacagaaaaagaaaattcattAACTCTGACCTGGCGCTGGACACTGAGGagcTGTTTCAAGATCTTAGTCAACTTCAGGAGACCTGGCTCGCCGAAGCTCAAGTTCCTGATAATGACGAGCAGTTTGTTCCAGACTTTCAGAGTGAAAACTTGGGGCTCCACGGGCTGCAGTTGAGGCTGAAGCGAGAGCCTCACAGTCCCTGTGCTGATCTGGGCTCAGCCTGCAGTCAGGAGAGGCCCTTCAGACTCCACTATGGGGAGAAGTGCCTCTATAAcatcagTGCCTACGAGCAGAAGCATCCGTCGGGAATGAAGGCCTCCAGCCCTGTGTCGACCCCCTGCAGCACCCCTGTGTCCCCTGGACAGCATGTGTCTCCCACTGCTGCCCCGACCCCCAAACCAGAGCGGACGTACCCACACCTCGCACCCCCACAGCCCCTGCCCGACAGTGCATATCCCATAGACCACAGATTCCGCCGGCAGTTGTCGGAGCCCTGTCATTCGTTCCCCTCTCCTTCAATGTCCCGGGACGGACGGCCCATGTACCATCGGCAGATGTCAGAGCCCAGCATCCCCTTCCCTCCTCAGGGCTTCAAGCAGGAGTACGTGGACCCCCTGTTCGAGCATCCGGCCATGATGGGGGCGCCGCTCCCCCAGCCGTACACACACTCCATGATGATCAAACAAGAGCCGCGCGACTTCACCTACGACTCAGAAGTGCCTAGCTGTCACTCTGTTTATCTCAGACAAGAGGGATACCTGGCACACAGTAACAGAACTGAAGGCTGTATGTTTGACAAAGTTGCAAGGCACTTCTATGATGACACTTGTGTGGTACCGGAGAAGGCGGAGGGTGACATAAAGCAGGAGGCGGGGCTTTACCGTGAAGGGCCGACCTATCAGAGACGAGGCTCTCTGCAGCTCTGGCAGTTTCTAGTGGCTCTGCTGGACGATCCCTCAAACTCACATTTCATCGCGTGGACCGGCCGGGGCATGGAGTTTAAACTCATTGAGCCTGAGGAGGTGGCGCGACGTTGGGGAATCCAAAAGAATCGACCCGCCATGAACTACGACAAACTCAGCAGATCGCTGCGCTACTACTATGAAAAAGGCATCATGCAAAAGGTGGCAGGCGAGAGATACGTATACAAGTTTGTCTGTGACCCCGAGGCTCTGTTCTCCATGGCCTTCCCCGACAATCAGCGTCCCGTGCTGAAAACCGACCTGGAGCGACAGATCAACGAGGAGGACACCGTCCCGCTGTCGCACTTTGATGAAAACATGGCCTACATTCAAGAGGGAGGATACTGTAACCCACACCCATACAACGAGGCCTATGTCTACTGAAAAAACAGTCATTCCCCAGGACAAA
>TCONS_00018447
ATGGACGGACTTCACGACCAACAAGTGCCTTTTATAAAGTCTCATAATCCTCGGGGAAAGACGTCCGGCACGAGACCAGCAAAGgacagaaaaagaaaattcattAACTCTGACCTGGCGCTGGACACTGAGGagcTGTTTCAAGATCTTAGTCAACTTCAGGAGACCTGGCTCGCCGAAGCTCAAGTTCCTGATAATGACGAGCAGTTTGTTCCAGACTTTCAGAGTGAAAACTTGGGGCTCCACGGGCTGCAGTTGAGGCTGAAGCGAGAGCCTCACAGTCCCTGTGCTGATCTGGGCTCAGCCTGCAGTCAGGAGAGGCCCTTCAGACTCCACTATGGGGAGAAGTGCCTCTATAAcatcagTGCCTACGAGCAGAAGCATCCGTCGGGAATGAAGGCCTCCAGCCCTGTGTCGACCCCCTGCAGCACCCCTGTGTCCCCTGGACAGCATGTGTCTCCCACTGCTGCCCCGACCCCCAAACCAGAGCGGACGTACCCACACCTCGCACCCCCACAGCCCCTGCCCGACAGTGCATATCCCATAGACCACAGATTCCGCCGGCAGTTGTCGGAGCCCTGTCATTCGTTCCCCTCTCCTTCAATGTCCCGGGACGGACGGCCCATGTACCATCGGCAGATGTCAGAGCCCAGCATCCCCTTCCCTCCTCAGGGCTTCAAGCAGGAGTACGTGGACCCCCTGTTCGAGCATCCGGCCATGATGGGGGCGCCGCTCCCCCAGCCGTACACACACTCCATGATGATCAAACAAGAGCCGCGCGACTTCACCTACGACTCAGAAGTGCCTAGCTGTCACTCTGTTTATCTCAGACAAGAGGGATACCTGGCACACAGTAACAGAACTGAAGGCTGTATGTTTGACAAAGTTGCAAGGCACTTCTATGATGACACTTGTGTGGTACCGGAGAAGGCGGAGGGTGACATAAAGCAGGAGGCGGGGCTTTACCGTGAAGGGCCGACCTATCAGAGACGAGGCTCTCTGCAGCTCTGGCAGTTTCTAGTGGCGCGACGTTGGGGAATCCAAAAGAATCGACCCGCCATGAACTACGACAAACTCAGCAGATCGCTGCGCTACTACTATGAAAAAGGCATCATGCAAAAGGTGGCAGGCGAGAGATACGTATACAAGTTTGTCTGTGACCCCGAGGCTCTGTTCTCCATGGCCTTCCCCGACAATCAGCGTCCCGTGCTGAAAACCGACCTGGAGCGACAGATCAACGAGGAGGACACCGTCCCGCTGTCGCACTTTGATGAAAACATGGCCTACATTCAAGAGGGAGGATACTGTAACCCACACCCATACAACGAGGCCTATGTCTACTGA

Function

symbol description
etv1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within peripheral nervous system neuron development; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain; lens placode; posterior pancreatic bud; and trigeminal ganglion. Orthologous to human ETV1 (ETS variant transcription factor 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070104-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within peripheral nervous system neuron development; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain; lens placode; posterior pancreatic bud; and trigeminal ganglion. Orthologous to human ETV1 (ETS variant transcription factor 1).

Ensembl:

ensembl_id ENSDARG00000101959

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018445 False 6605 mRNA 0.39 13 34172371 34214440
TCONS_00018446 False 1548 mRNA 0.55 12 34177164 34213990
TCONS_00018447 True 1344 mRNA 0.55 12 34177189 34213898

Neighbor

gene id symbol gene type direction distance location
XLOC_009380 si:dkey-30e9.7 coding downstream 115492 33994575 ~ 34056879 (-)
XLOC_009379 lsr coding downstream 206931 33937756 ~ 33965440 (-)
XLOC_009378 mag coding downstream 238551 33891808 ~ 33933820 (-)
XLOC_009376 CR855379.2 coding downstream 284704 33868661 ~ 33887667 (-)
XLOC_009377 NA coding downstream 295040 33869579 ~ 33877331 (-)
XLOC_009382 dgkb coding upstream 1356 34215796 ~ 34326461 (-)
XLOC_009383 FP017158.1 coding upstream 64981 34279421 ~ 34279535 (-)
XLOC_009384 agmo coding upstream 120282 34334722 ~ 34418525 (-)
XLOC_009385 meox2a coding upstream 213868 34428308 ~ 34478448 (-)
XLOC_009386 crppa coding upstream 280616 34495056 ~ 34568705 (-)
XLOC_009371 NA non-coding downstream 490693 33665924 ~ 33681678 (-)
XLOC_009370 CT027778.1 non-coding downstream 509199 33663055 ~ 33663172 (-)
XLOC_009367 NA non-coding downstream 1354376 32813736 ~ 32817995 (-)
XLOC_009389 NA non-coding upstream 388082 34602522 ~ 34607406 (-)
XLOC_009404 CR848683.2 non-coding upstream 1200026 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 non-coding upstream 1226300 35440740 ~ 35468800 (-)
XLOC_009406 NA non-coding upstream 1399794 35614234 ~ 35675985 (-)

Expression


Co-expression Network