Fish Transcriptome and Expression Database

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model fish

XLOC_009383 (FP017158.1)

Basic Information

Item	Value
gene id	XLOC_009383
gene name	FP017158.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	34279421 ~ 34279535 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018452
GCCTGCAGCTAGCTGTCTGccactctcacatggtcgccaactgaagctaagcagggctgtgcctggtcaatacctggatggAAGACTACATggtaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111514

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00018452	True	115	rRNA	0.55	1	34279421	34279535

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_009381	etv1	coding	downstream	64981	34172371 ~ 34214440 (-)
XLOC_009380	si:dkey-30e9.7	coding	downstream	222542	33994575 ~ 34056879 (-)
XLOC_009379	lsr	coding	downstream	313981	33937756 ~ 33965440 (-)
XLOC_009378	mag	coding	downstream	345601	33891808 ~ 33933820 (-)
XLOC_009377	NA	coding	downstream	402090	33869579 ~ 33877331 (-)
XLOC_009384	agmo	coding	upstream	55187	34334722 ~ 34418525 (-)
XLOC_009385	meox2a	coding	upstream	148773	34428308 ~ 34478448 (-)
XLOC_009386	crppa	coding	upstream	215521	34495056 ~ 34568705 (-)
XLOC_009387	sostdc1a	coding	upstream	282662	34562197 ~ 34567370 (-)
XLOC_009388	ankmy2a	coding	upstream	293776	34573311 ~ 34590820 (-)
XLOC_009376	CR855379.2	non-coding	downstream	391754	33868661 ~ 33887667 (-)
XLOC_009371	NA	non-coding	downstream	597743	33665924 ~ 33681678 (-)
XLOC_009370	CT027778.1	non-coding	downstream	616249	33663055 ~ 33663172 (-)
XLOC_009367	NA	non-coding	downstream	1461426	32813736 ~ 32817995 (-)
XLOC_009389	NA	non-coding	upstream	322987	34602522 ~ 34607406 (-)
XLOC_009404	CR848683.2	non-coding	upstream	1134931	35414466 ~ 35661368 (-)
XLOC_009405	CR848683.1	non-coding	upstream	1161205	35440740 ~ 35468800 (-)
XLOC_009406	NA	non-coding	upstream	1334699	35614234 ~ 35675985 (-)
XLOC_009407	NA	non-coding	upstream	1482146	35761681 ~ 35886373 (-)

Expression

Co-expression Network