G194780


Basic Information

Item Value
gene id G194780
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 589570 ~ 619405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU221220
AAACTTTTATTGCTTCAAAATCAAAGCAGACAAAGCATGTAGAAAAGCTTGAAGTCATAAACCCAATTTCAACACATTTTTATTTAAAAGGACAATTATTATTATTATTTTATGTGCAATTTTCCCTCACTGAAAGCTGATGGGACATGCTGGTCACCATATTTTAAGAAAGATCCACATGAATGCATAATAGTTGTGGATATATGTGCACAAGCTGCAGTCGTGAAGCATTTGTAACCCCTGGTCTACATCACACGTCTGATCTTCATGGTGATGGACTTCAGAGATTTCCAGCTGTTCTTCCAGTAGTACCAGTGTAGCCCAGTATACAGATTGCCATCATCTTTTCCCCAGAAATACAGACCAGTGGGGTTTGTGTAATCACAATCGTTGTACCAAAACCCTCCCATAGAGTATGTTAAAGCACAGTTACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU221220 True 434 lncRNA 0.38 2 589570 619405

Neighbor

gene id symbol gene type direction distance location
CI01000046_00499754_00526138 NA coding upstream 62512 499754 ~ 528550 (+)
CI01000046_00494421_00496860 KIAA0141 coding upstream 92612 494421 ~ 496958 (+)
CI01000046_00492034_00493262 KIAA0141 coding upstream 96232 492034 ~ 493338 (+)
CI01000046_00477221_00481241 NA coding upstream 108327 477221 ~ 481243 (+)
CI01000046_00436111_00443677 NUDT6 coding upstream 144072 436111 ~ 446757 (+)
CI01000046_00670755_00673139 NA coding downstream 51350 670755 ~ 673447 (+)
CI01000046_00770575_00774675 CDIP1 coding downstream 151170 770575 ~ 776269 (+)
CI01000046_00781088_00781355 CP033, SNRNP25 coding downstream 161683 781088 ~ 781355 (+)
CI01000046_00784993_00786387 NA coding downstream 165240 784645 ~ 787080 (+)
CI01000046_00893353_00931079 SHISA9B coding downstream 273894 893299 ~ 932443 (+)
G194779 NA non-coding upstream 1080 588125 ~ 588490 (+)
G194762 NA non-coding upstream 102230 486933 ~ 487340 (+)
G194727 NA non-coding upstream 122287 464614 ~ 467283 (+)
G194721 NA non-coding upstream 129225 458008 ~ 460345 (+)
G194803 NA non-coding downstream 42582 661987 ~ 664124 (+)
G194809 NA non-coding downstream 57980 677385 ~ 677650 (+)
G194739 NA non-coding downstream 62298 681703 ~ 682678 (+)
G194810 NA non-coding downstream 64383 683788 ~ 684595 (+)
G194716 NA non-coding downstream 67599 687004 ~ 759690 (+)
G195003 NA other downstream 541752 1161157 ~ 1161690 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 920089 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 1253390 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 1820512 2442395 ~ 2457280 (+)
G196936 NA other downstream 2567590 3186995 ~ 3194271 (+)

Expression


Co-expression Network