XLOC_009387 (sostdc1a)


Basic Information

Item Value
gene id XLOC_009387
gene name sostdc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 34562197 ~ 34567370 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018459
AGTGTTTCTCTGGGTGTGGTTTAGAGAGAGGGAGACGTCCTGCCCTTATTTTATCATCCCGCTCACCTGAGCCTTTGCCAAATCCGGAGGCGggagtgtgtatatatactgaatatatataaCCCAAGACATGATGATAGTTAGTGAGAGTCATTCAGAGTTGAAGCACATCTCTCCATTGGCCGTGGGTCATTACGCATCGCCATGTATATAAACGCACCAGAGTCGTGCAATTTCAtggttttattttgctttttaataaGGAGTGGTTTGACTTTGAAGAACGATGCTACGGAGATTTTCTACTCGCATGTGGTCAGTCCCGTTCAGGATGCGCAGAGCAACGCGTCTCTCAACCGCGCGCGCTCCGGAGGAAGAGGCTTCAGCACGCACGACAGAGAACGAATCCCAGTAGGCTGCAGAGAGCTCCGATCCACCAAGTACATCTCAGATGGCCAGTGCACCAGCATAAACCCTGTGAAAGAGCTGGTGTGCACAGGACAGTGCCTCCCCGCTCAGATGCTGCCCAATTGGATTGGAGGATACGGCAAGAAGTCCTGGAACCGCCGGAACAGTCAGGAATGGCGCTGTGTAAATGACAAGACCCGAACTCAGCGGATTCAGCTCCAGTGCCAGGATGGCAGCACCAGGACCTACAAGATCACAGTGGTGACCTCCTGCAAATGCAAACGATACTCGCGGCAACACAATGAATCAGGAGTTAAGTCTGAGGGATACTCTCATAGCCAGATCAAAAAACAGAAAAGCAAAGTGGCCACCAGGACAGAAAGCTAAATAAGTCTCTGCTTGAACTGACCTTAATATAGAATTGCTGGCACTGAACTTTCTTTGAGAGCAAGTGCAGGGCTCAGAGTTCACTGTGAAAGACATCAACATAATCACAATTAACATGAGGCCTTTGTGACCCTGTGCTGGAAGAGATGGACAATGACAACAGCATATTGCCTTACAAAAATGATTAGAAACAGACTCGTGATCCTGATTGCTTTTGTTGTCTCCGTCTCATATGTGTGGCAATCACTTGCTGTAGTTTATGCTGTAAGTTTATGTGTTCAGCGTCAATACATGTAGTTCTCAAACCCGAGAAATGCATAGCTACCTGTAAATACAATGTTTGTATATATGCCTATGCATTTCTTTGTTATTAATCGTTTTGCAGGACCTCTATGTGTTAAAAAAGCGGATGTAATATATTTTGCCTTGactttgctgactttaaaatatttttagtttgtgCAAGCATTATTCAGACAAGATATTGCACTATAGTGACAATGTTCATATGAGCTATTATGatgtaaaactattaaaatgaaaacatct

Function

symbol description
sostdc1a Predicted to enable BMP binding activity. Predicted to be involved in negative regulation of BMP signaling pathway and negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SOSTDC1 (sclerostin domain containing 1).

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0036122 BMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-64 Predicted to enable BMP binding activity. Predicted to be involved in negative regulation of BMP signaling pathway and negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SOSTDC1 (sclerostin domain containing 1).

Ensembl:

ensembl_id ENSDARG00000068892

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018459 True 1344 mRNA 0.44 2 34562197 34567370

Neighbor

gene id symbol gene type direction distance location
XLOC_009385 meox2a coding downstream 83749 34428308 ~ 34478448 (-)
XLOC_009384 agmo coding downstream 143672 34334722 ~ 34418525 (-)
XLOC_009382 dgkb coding downstream 235736 34215796 ~ 34326461 (-)
XLOC_009383 FP017158.1 coding downstream 282662 34279421 ~ 34279535 (-)
XLOC_009381 etv1 coding downstream 347757 34172371 ~ 34214440 (-)
XLOC_009388 ankmy2a coding upstream 5941 34573311 ~ 34590820 (-)
XLOC_009389 NA coding upstream 35152 34602522 ~ 34607406 (-)
XLOC_009390 bag6 coding upstream 50990 34618360 ~ 34668485 (-)
XLOC_009391 gabbr1a coding upstream 150144 34717514 ~ 34845414 (-)
XLOC_009392 sh3bp5la coding upstream 286655 34854025 ~ 34866219 (-)
XLOC_009376 CR855379.2 non-coding downstream 674530 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding downstream 684866 33869579 ~ 33877331 (-)
XLOC_009371 NA non-coding downstream 880519 33665924 ~ 33681678 (-)
XLOC_009370 CT027778.1 non-coding downstream 899025 33663055 ~ 33663172 (-)
XLOC_009404 CR848683.2 non-coding upstream 847096 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 non-coding upstream 873370 35440740 ~ 35468800 (-)
XLOC_009406 NA non-coding upstream 1046864 35614234 ~ 35675985 (-)
XLOC_009407 NA non-coding upstream 1194311 35761681 ~ 35886373 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_02295150_02298027 SOSTDC1A coding CI01000095 null 2294733 ~ 2298075 (-)