G194977


Basic Information

Item Value
gene id G194977
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1072325 ~ 1072586 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU221449
CAAGTTTTATAATGGGATTGAATGGTACCCTAGATTCAGAGGTGTCAAGTAACGAAGTACAAATACTTTGTTACCTTACTTAAGTAGAAATTTTGGGTATCTATACTTTACAGGAGTAATTATTTTCAGCCGACTTTTTACTTCTACTCCTTACATTTTCACGCAATTGTCTGTACTTTCTACTCCTTACATTTTAAAAATATCCTTTTTCATTTCGGCTTGTTTTCATTCCGGCTTGTCATCATTCAAAAAAAAAAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221449 True 262 lncRNA 0.31 1 1072325 1072586

Neighbor

gene id symbol gene type direction distance location
CI01000046_01067894_01070331 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding upstream 1548 1066936 ~ 1070777 (+)
CI01000046_01026787_01028640 IGFALS coding upstream 43456 1026502 ~ 1028869 (+)
CI01000046_00893353_00931079 SHISA9B coding upstream 139882 893299 ~ 932443 (+)
CI01000046_00784993_00786387 NA coding upstream 285245 784645 ~ 787080 (+)
CI01000046_00781088_00781355 CP033, SNRNP25 coding upstream 290970 781088 ~ 781355 (+)
CI01000046_01149090_01159654 NA coding downstream 76350 1148936 ~ 1160102 (+)
CI01000046_01246234_01251650 NA coding downstream 173146 1245732 ~ 1251689 (+)
CI01000046_01255895_01262232 NA coding downstream 183309 1255895 ~ 1262547 (+)
CI01000046_01275798_01283718 PDPK1A coding downstream 203212 1275798 ~ 1284100 (+)
CI01000046_01289846_01293954 KCTD5A, KCTD5 coding downstream 216982 1289568 ~ 1294336 (+)
G194968 NA non-coding upstream 35522 1036553 ~ 1036803 (+)
G194964 NA non-coding upstream 46272 1025833 ~ 1026053 (+)
G194823 NA non-coding upstream 271397 799294 ~ 800928 (+)
G194719 NA non-coding upstream 281636 735070 ~ 790689 (+)
G194716 NA non-coding upstream 312635 687004 ~ 759690 (+)
G194979 NA non-coding downstream 799 1073385 ~ 1073664 (+)
G194987 NA non-coding downstream 13581 1086167 ~ 1086399 (+)
G194988 NA non-coding downstream 13945 1086531 ~ 1086796 (+)
G194991 NA non-coding downstream 17630 1090216 ~ 1090428 (+)
G195015 NA non-coding downstream 74421 1147007 ~ 1147555 (+)
G194721 NA other upstream 611980 458008 ~ 460345 (+)
G195003 NA other downstream 88571 1161157 ~ 1161690 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 466908 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 800209 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 1367331 2442395 ~ 2457280 (+)
G196936 NA other downstream 2114409 3186995 ~ 3194271 (+)

Expression


Co-expression Network