XLOC_009389


Basic Information

Item Value
gene id XLOC_009389
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 34602522 ~ 34607406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018836
TCCTGAAGTAAAAAGCTTCACTTATTTTGGTGGGAAAAGTCAGTCGAGATTGGACTACTTCTTCCTGAAAAGTCACAATATATCCTGCATAGCTGCTTGTAGCATTCACAAAAGGCCAAAGCACTCTGATAAGGAGGAGTATGTTTCTGATCACGCCCCATTGTCCATTCAAATTCAGATAGATGGACCGAAATGGCAGTTCGATTCTTGTCTTCTTGAAGATGAAACGTGTATGGAGCAACTCTCAAACACAATAAGGAAAATTTCAAGAATTAATGCACATAAGAAAGAATATCTGTGGCCAGGATTGAAGGTTAGACTTGTATGTGAGGCAGTAGCTTTGCAGAGATCTCACCTCAAACCATCATGTTCAGAAACTGCAGAATTTCCTCAAGAGATGGACCAAGGAGCTTTTTCAGATGCAGAATCATCCATTGAGGCTCTTCACACAGCAAAAACATCAAGCCTTCTGAACTTTTTGAATCATTTACACCAAACTGAGAGATTTGATGACGTAAAATCCACTCTGATTACCGTTCTAAACGAATACATTTCGAAAAAAGAAATTCTGGATGCAATACTCTCTCTGCCTCAGTCTGAGAGTCCATCAGTTGATGGGCTAACTGTGCATTTCTATAAGCATTATGCTTGTAAAATTACTGACCTGTTACAAGTATTTTTCAATCAAATCTTCGACTCGGTTAAACACTCAGTTATTGACTCACCGAATCCACAAAGAGATGATCATTCATACAGCTGTAATATTCAATATCACTGCAGTCCGATGACAATATTTAACGTGGACTATAAAATTCTGGCTGTGATTCTAGCAGAGAGGCTGAATGGTGttattgaacacattttaaatcCAGGTGAACCAAGCGAACCACACCGTTTGATTAAACACAACATTAATCAAATCCCAATGCTGATTATTGCATTACAACTCGATCCAGGTGCCCTGAAATGGCCATTTCTGTTTAATAGCTTAAAGTCTGTGAACCTACCTGACAAATTTAGATCTGTGTTGAAGCTGTTGTTGTTGGCAGATCATAACAGATCTCAGGGCCTGAGGGCAGGGTGTCCATTGActcctttattaatcagcatCTGCCTTCTTCCTCTCATTAACTCTGTTAACCGTGAGAACAGACCTGAAGTCCAAGGAGAAAACCTAAAGTCAGTCATTGAAAAAAACACAGCCGTAATTTTGCTTCCTAATTCTAACGAGGCTTTAGGTGGTTTTGAAACAATGCTAAGCGATTTTATTGAGACGTCAGGGTTTATCGTTGACAAAAGAAATGAGGTTTTCATacctggtttttctggtttgatttaGTCAAAGGCAGCTTACGCTTTTTAAGAAACGGACAATGGATTTTGTAGTTTAGAAAGTGGTTGTAAGGTCTGAATAATGATGAAAAAATATGTTACGATTCATTCGCGTGTTTTCATCGATTATCTGTGAGGCTGACGACATTCCATAAATTAATCATTTGCATATATTAAGAATCACCTCAACTTTGACTGTTGCAAAGAgtatagaatcaccaagaggcgacactttcTTGCTATTTGGCAAACAGCTGTTAGATGCCGCTACTgtcattttggaataaaaatgaaaaacaacagcACTGATATGAATTAATCAAAATATTGAGTTAAATTTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018836 True 1675 lncRNA 0.38 2 34602522 34607406

Neighbor

gene id symbol gene type direction distance location
XLOC_009388 ankmy2a coding downstream 11702 34573311 ~ 34590820 (-)
XLOC_009386 crppa coding downstream 33817 34495056 ~ 34568705 (-)
XLOC_009387 sostdc1a coding downstream 35152 34562197 ~ 34567370 (-)
XLOC_009385 meox2a coding downstream 124074 34428308 ~ 34478448 (-)
XLOC_009384 agmo coding downstream 183997 34334722 ~ 34418525 (-)
XLOC_009390 bag6 coding upstream 10954 34618360 ~ 34668485 (-)
XLOC_009391 gabbr1a coding upstream 110108 34717514 ~ 34845414 (-)
XLOC_009392 sh3bp5la coding upstream 246619 34854025 ~ 34866219 (-)
XLOC_009393 mgat1a coding upstream 260112 34867518 ~ 34878388 (-)
XLOC_009394 BX629344.1 coding upstream 273607 34881013 ~ 34885624 (-)
XLOC_009383 FP017158.1 non-coding downstream 322987 34279421 ~ 34279535 (-)
XLOC_009376 CR855379.2 non-coding downstream 714855 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding downstream 725191 33869579 ~ 33877331 (-)
XLOC_009371 NA non-coding downstream 920844 33665924 ~ 33681678 (-)
XLOC_009370 CT027778.1 non-coding downstream 939350 33663055 ~ 33663172 (-)
XLOC_009404 CR848683.2 non-coding upstream 807060 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 non-coding upstream 833334 35440740 ~ 35468800 (-)
XLOC_009406 NA non-coding upstream 1006828 35614234 ~ 35675985 (-)
XLOC_009407 NA non-coding upstream 1154275 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 non-coding upstream 1172634 35780040 ~ 35780805 (-)

Expression


Co-expression Network