G195048


Basic Information

Item Value
gene id G195048
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1228716 ~ 1228919 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU221540
CTGAAATTATTCTTTAGCGGAGCCAATAAAACAAAGCACCAGCCAGGCATCTCTTCTCAGCCAAGGATTTCCAAATGGCTGGAAGAAGCTCTAAACGGCTTTACCTGCACACAAGAAGGTGGGAATGGGGGATGTATCCAACGGTTATTTACTTCATTGATTTCACAGCTGCGCTGAAATCGTAGCACCTGGATTGAATGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221540 True 204 lncRNA 0.46 1 1228716 1228919

Neighbor

gene id symbol gene type direction distance location
CI01000046_01149090_01159654 NA coding upstream 68614 1148936 ~ 1160102 (+)
CI01000046_01067894_01070331 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding upstream 157939 1066936 ~ 1070777 (+)
CI01000046_01026787_01028640 IGFALS coding upstream 199847 1026502 ~ 1028869 (+)
CI01000046_00893353_00931079 SHISA9B coding upstream 296273 893299 ~ 932443 (+)
CI01000046_00784993_00786387 NA coding upstream 441636 784645 ~ 787080 (+)
CI01000046_01246234_01251650 NA coding downstream 16813 1245732 ~ 1251689 (+)
CI01000046_01255895_01262232 NA coding downstream 26976 1255895 ~ 1262547 (+)
CI01000046_01275798_01283718 PDPK1A coding downstream 46879 1275798 ~ 1284100 (+)
CI01000046_01289846_01293954 KCTD5A, KCTD5 coding downstream 60649 1289568 ~ 1294336 (+)
CI01000046_01318513_01343464 USP31 coding downstream 87751 1316670 ~ 1344195 (+)
G195047 NA non-coding upstream 849 1227485 ~ 1227867 (+)
G195038 NA non-coding upstream 20388 1206445 ~ 1208328 (+)
G195018 NA non-coding upstream 71384 1157127 ~ 1157332 (+)
G195015 NA non-coding upstream 81161 1147007 ~ 1147555 (+)
G194991 NA non-coding upstream 138288 1090216 ~ 1090428 (+)
G195049 NA non-coding downstream 309 1229228 ~ 1229433 (+)
G195535 NA non-coding downstream 155833 1384752 ~ 1384970 (+)
G195564 NA non-coding downstream 167844 1396763 ~ 1397086 (+)
G195909 NA non-coding downstream 514881 1743800 ~ 1744017 (+)
G196035 NA non-coding downstream 637585 1866504 ~ 1866807 (+)
G195003 NA other upstream 67026 1161157 ~ 1161690 (+)
G194721 NA other upstream 768371 458008 ~ 460345 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 310575 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 643876 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 1210998 2442395 ~ 2457280 (+)
G196936 NA other downstream 1958076 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 2714909 3943794 ~ 3945500 (+)

Expression


Co-expression Network