G195049


Basic Information

Item Value
gene id G195049
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1229228 ~ 1229433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU221541
TTTTTTTTAATTAAGAGATATGACCATTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCCTCATGTCGTTCTACACCCATAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATCCGATGGCTCAGTGAGGCCTGCATTGACAGCAATGTCACCAAACCTCTCAAGATCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221541 True 206 lncRNA 0.36 1 1229228 1229433

Neighbor

gene id symbol gene type direction distance location
CI01000046_01149090_01159654 NA coding upstream 69126 1148936 ~ 1160102 (+)
CI01000046_01067894_01070331 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding upstream 158451 1066936 ~ 1070777 (+)
CI01000046_01026787_01028640 IGFALS coding upstream 200359 1026502 ~ 1028869 (+)
CI01000046_00893353_00931079 SHISA9B coding upstream 296785 893299 ~ 932443 (+)
CI01000046_00784993_00786387 NA coding upstream 442148 784645 ~ 787080 (+)
CI01000046_01246234_01251650 NA coding downstream 16299 1245732 ~ 1251689 (+)
CI01000046_01255895_01262232 NA coding downstream 26462 1255895 ~ 1262547 (+)
CI01000046_01275798_01283718 PDPK1A coding downstream 46365 1275798 ~ 1284100 (+)
CI01000046_01289846_01293954 KCTD5A, KCTD5 coding downstream 60135 1289568 ~ 1294336 (+)
CI01000046_01318513_01343464 USP31 coding downstream 87237 1316670 ~ 1344195 (+)
G195048 NA non-coding upstream 309 1228716 ~ 1228919 (+)
G195047 NA non-coding upstream 1361 1227485 ~ 1227867 (+)
G195038 NA non-coding upstream 20900 1206445 ~ 1208328 (+)
G195018 NA non-coding upstream 71896 1157127 ~ 1157332 (+)
G195015 NA non-coding upstream 81673 1147007 ~ 1147555 (+)
G195535 NA non-coding downstream 155319 1384752 ~ 1384970 (+)
G195564 NA non-coding downstream 167330 1396763 ~ 1397086 (+)
G195909 NA non-coding downstream 514367 1743800 ~ 1744017 (+)
G196035 NA non-coding downstream 637071 1866504 ~ 1866807 (+)
G196038 NA non-coding downstream 641265 1870698 ~ 1870980 (+)
G195003 NA other upstream 67538 1161157 ~ 1161690 (+)
G194721 NA other upstream 768883 458008 ~ 460345 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 310061 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 643362 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 1210484 2442395 ~ 2457280 (+)
G196936 NA other downstream 1957562 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 2714395 3943794 ~ 3945500 (+)

Expression


Co-expression Network