G195965


Basic Information

Item Value
gene id G195965
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1872795 ~ 1959148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222565
CTGAACCCATGTGTTTAATTTGTCTACAGCGTGGTTAGTTAAATCGATTTATTTCATTTTTACTTTGCGGACGAGGCAACGAACTGTCAGACAGTTACAGTCAAAAGGATGTACAGGATGTTTTCCACATTTCTTCTTTGTCAGATCATCATCACACTCATCTGCCAAACACTTTGTTACGAACCCACAGAGAAGGACTTGAAGTGTTTCAATGACTATGAGACAGAAATGAAGTGCAGTTTTGAGTCTGACGGCCTCATAAGTTGCTCTGGATACAAACTCAATATCACACGTAATGAAGCAGATGTGTTAAAAGAATATACATGCATCTTTGAGAGAAGTCATCACAGTCCCAGTTGTGAATGTAAAATTGAAGTCCAAGGGTTTTCTACTTCTGAGATATTCACTACTACACTTCTGGAAGGAACAAA
>TU222567
CTGAACCCATGTGTTTAATTTGTCTACAGCGTGGTTAGTTAAATCGATTTATTTCATTTTTACTTTGCGGACGAGGCAACGAACTGTCAGACAGTTACAGTCAAAAGGATGTACAGGATGTTTTCCACATTTCTTCTTTGTCAGATCATCATCACACTCATCTGCCAAACACTTTGTTACGAACCCACAGAGAAGGACTTGAAGTGTTTCAATGACTATGAGACAGAAATGAAGTGCAGTTTTGAGTCTGACGGCCTCATAAGTTGCTCTGGATACAAACTCAATATCACACGTAATGAAGCAGATGTGTTAAAAGAATATACATGCATCTTTGAGAGAAATCATCACAGTCCCAGTTGTGAATGTAAAATTGAAGTCCAAGGGTTTGTTATAACAGAGATATTCACTACTACACTTCTGGAAGGAACAAACGTTTTAT
>TU222568
TCTGGCGAGTTCCCTGTTATACTGGCAAAAAGGGAAGTGTGAGGTAGACCATTATTTTTCACGGTTTAAACTACTCGTCTGGGCTTTTCGTGCGTTCCTGACTGAACCCATGTGTTTAATTTGTCTACAGCGTGGTTAGTTAAATCGATTTATTTCATTTTTACTTTACGGGCGAGGCAACGAACAGTCAAAAGGACGTACAGGATGTTTTCCACATTTCTTCTTTGTCAGATCATCATCACACTCATCTGCCAAACACTTTGTTACGAACCCACAGAGAAGGACTTGAAGTGTTTCAATGACTATGAGACAGAAATGAAGTGCAGTTTCGAGTCTGACGGCCTCATAAGTTGCTTTGGATACAAACTCAATATCACACGTAATGAAGCAGATGTGTTAAAAGAATATACATGCATCTTTGAGAGAAATCATCACAGTCCCAGTTGTGAATGTAAAATTGAAGTCCAAGGGTTTGTTATAACAGAGATATTCACTACTACACTTCTGGAAGGAACAAACGTTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU222565 False 181 TUCP 0.39 2 1872795 1873083
TU222567 True 312 TUCP 0.38 3 1872795 1959148
TU222568 True 526 lncRNA 0.39 4 1888077 1959148

Expression


Co-expression Network