G195978


Basic Information

Item Value
gene id G195978
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1997123 ~ 1999094 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222587
AGATGAACGAAAGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACAAACCCTTTAAGTACTTCTGTCTCTTTGATGATCATATATTTATTTGAAATGTAAAAAATGTCATGTTCTCCCCTTTTTTTTTTTTTTTTTTTCCCTAAGTCATATTTCTATGGCCCCATATTATAAACAAGCCTTCTAATTTCAGTTTACAACAGACATCTAGAAATATAATTAGGCATATTAGTTTTACTTCAATATGTCAGTTCTCCTTCACAGCTCACTGTTGTGGCAATTTTTGTTTTGCCTCAAATCTTAAAAGCTCTCATTTTATTGAGAGGTCCTAAACTCATATCTCAGATATATTATTTCAATTGCTATTAAATAAATTGAATATGCATTTTGCCACTCGGTTTTAGAAGTCGTATTGCTTTTCAAAAATCTGCTTTCATGCATCCCAGGTGTAGATCTTAAGTTAAGAAGAAAAGGAAACAGCCTTAAATATGCTTTTGCTATGTAGCAGTGGTGTAACACAACTAAATTATTACTTTTTTAACATAATGTATTAACCTAAGACCTGAGCTTCAAACAAGCATAATAATGGTGATCAGTGTTAAGGCTTATATGCATTACAAGTAACGAGGTACATAATCAGATTTTAATCAGAAGTAACCAGTAAAATTTTAATTTTACAACATACAATAAAAAAAATATCTGAGTTACTTTTTCAAATAAGTAACTCAAGTTACTTTGTTTTCCTATGAATTTTCAGAAAGCTTTCTTGTCCCCATTTTGGGAGAAATTGGGAGTAAGTGCTGAGGCGTTGTGTGTACAAATGAGTACAACAACAGCATAAGTTAGTAATTTTAAGCAGACTTCATTAGAGTCATTACCATGAGAAGTGATGGAATACAAAGTTTTAAAATTGCAGAACATGCCAGACCAAATATGAAATGAAGAAAGTGAAAAGGTAGTACAATATAAATACAAAAGAGGGCACCATAAAGTTAGTCACCATGAAATCAAAATTGAAAATTCATGTTTTTTTATTTGTTTGTTTTTCAAGATATAAATGCACTGCACTAGCTTTAAAAAAGCATAAACATTATCCTCAAAACCTAAATGTAGTTTATTCATAATTCTCACCATGTGAACACTAGTGAGCATGTGTAAAAAATACCCACAGGTGAGTAAATTCTTAATAAATGTTTTTTTTTTTTTTTTTTTTTTTTTTAATCTTACTGAAGTTGGTTGAATATAGGATTTTTTTTTTTTTTTTTTTTTTTAAACAGTACTTTGTATTTTAAATGTGTTAGGTACAGTACTTCAATTAAGCAATACAGTGGAGCCTTTTGCATCATAGCTTTTGCTACAACATAGACTTTAGCACAGCTCTCAGAAGATCTAAACTATCCATTTGTTTTAAACAGAATAAAATTTTAGATTTACATTACATTAACATATATTCATTTTATGTAATTTGATATGCAACTCATTTTATCCAAAGTGACTTGCAAAGGAAGATCATCATAATCAATTCATCATTTATTTTACTTTTTGTTTGACTTTGAAAAGGAACCATTTATACTTGTCAGATGCAAATTCATCACTGTCGTCTGCAAACAGTCAGCTCAAGTTGTCATCCTATATAGTTTCTAGATGTTAGTTGAGCAGTTTGATGAAAACACTGTTGCTGTAATGTAAGGAATTTTTAATCTGTATGTGGTAGTACATGTTTATCTTCATAGACTGATCCAAATGAACCATAGCCATGCGTCACCCCCCAGTCCTAAAATACCTTAAACATGCATAACAAGATGCACCTGTTTATCACATACTGTAGCAGGACAGCTGATGGAAAAAAAAAAAAGAGATGGTAATCTGTGTTTTTAATTTGTCTGAAAAATAAATGCCTGAAAAAACTTGTTTGACAGTAATGTGTGTCTAGCCGTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222587 True 1972 lncRNA 0.31 1 1997123 1999094

Neighbor

gene id symbol gene type direction distance location
CI01000046_01988070_01995034 UBFD1 coding upstream 1793 1986320 ~ 1995330 (+)
CI01000046_01963803_01965901 NA coding upstream 30071 1963555 ~ 1968371 (+)
CI01000046_01933932_01935589 NA coding upstream 59301 1932890 ~ 1937822 (+)
CI01000046_01903950_01922429 KDM8 coding upstream 74684 1902090 ~ 1922439 (+)
CI01000046_01865451_01881353 NA coding upstream 115754 1865451 ~ 1881369 (+)
CI01000046_02006028_02024639 NA coding downstream 6934 2006028 ~ 2024940 (+)
CI01000046_02027256_02031337 RMI2 coding downstream 28060 2027154 ~ 2031451 (+)
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding downstream 38425 2037421 ~ 2039716 (+)
CI01000046_02066859_02072868 NA coding downstream 67765 2066859 ~ 2073014 (+)
CI01000046_02123765_02158243 AXIN1 coding downstream 124671 2123765 ~ 2158243 (+)
G196051 NA non-coding upstream 34591 1962246 ~ 1962532 (+)
G196050 NA non-coding upstream 35364 1961219 ~ 1961759 (+)
G196038 NA non-coding upstream 126143 1870698 ~ 1870980 (+)
G195981 NA non-coding downstream 56976 2056070 ~ 2057016 (+)
G196076 NA non-coding downstream 79028 2078122 ~ 2078480 (+)
G196080 NA non-coding downstream 83591 2082685 ~ 2083646 (+)
G196085 NA non-coding downstream 87715 2086809 ~ 2087131 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 433786 1539494 ~ 1668012 (+)
G195003 NA other upstream 835433 1161157 ~ 1161690 (+)
G194721 NA other upstream 1536778 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 440823 2442395 ~ 2457280 (+)
G196936 NA other downstream 1187901 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1944734 3943794 ~ 3945500 (+)
G197055 NA other downstream 2150329 4149423 ~ 4149780 (+)
G197121 NA other downstream 2371917 4371011 ~ 4371430 (+)

Expression


Co-expression Network