G195981


Basic Information

Item Value
gene id G195981
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2056070 ~ 2057016 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222590
GTTTAAATCATAGTCGATTAAGATATATTTGTCATAACACACTCATGGCAAAGTGTGGGTGTGAAGCTGACCTGCGGACACCGTTTAAGAAACTTAATCAAATAAAATCAGATAAAAAAAAAGGTTTCAGAATGTTGCTTAATTTTCACCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAATTTGGTCAGCTGACTTTCAGGTGTATCATGGATTAGTCACCAATTCCAGCTACAATAAGCAAGCTATTCAAACAAAGGCATACTTTACCTCACAGAGGAACATAAATATCCCATGGTGCTCCTGTAGGATTTTGGGCACGGTCAAATTGATCTTAGGTCTATATCCGTAAGGATCGCACAGATTATCCCTGCAGATGAAGCCTTTACGTTCTAGGGTCCACACATCAATTTCTTCTTGGCAATAAGCAAAGGTACAGTGGCCAAGATACCGGCATTCTTGTCCCATCGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222590 True 474 lncRNA 0.37 2 2056070 2057016

Neighbor

gene id symbol gene type direction distance location
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding upstream 17015 2037421 ~ 2039716 (+)
CI01000046_02027256_02031337 RMI2 coding upstream 24619 2027154 ~ 2031451 (+)
CI01000046_02006028_02024639 NA coding upstream 31130 2006028 ~ 2024940 (+)
CI01000046_01988070_01995034 UBFD1 coding upstream 60740 1986320 ~ 1995330 (+)
CI01000046_01963803_01965901 NA coding upstream 89018 1963555 ~ 1968371 (+)
CI01000046_02066859_02072868 NA coding downstream 9843 2066859 ~ 2073014 (+)
CI01000046_02123765_02158243 AXIN1 coding downstream 66749 2123765 ~ 2158243 (+)
CI01000046_02264732_02268319 UNCX coding downstream 207556 2264572 ~ 2268638 (+)
CI01000046_02335530_02348525 NA coding downstream 276958 2333974 ~ 2348945 (+)
CI01000046_02356713_02359204 NA coding downstream 299638 2356654 ~ 2360009 (+)
G195978 NA non-coding upstream 56976 1997123 ~ 1999094 (+)
G196051 NA non-coding upstream 93538 1962246 ~ 1962532 (+)
G196050 NA non-coding upstream 94311 1961219 ~ 1961759 (+)
G196076 NA non-coding downstream 21106 2078122 ~ 2078480 (+)
G196080 NA non-coding downstream 25669 2082685 ~ 2083646 (+)
G196085 NA non-coding downstream 29793 2086809 ~ 2087131 (+)
G196086 NA non-coding downstream 30263 2087279 ~ 2087514 (+)
G196087 NA non-coding downstream 31708 2088724 ~ 2089219 (+)
CI01000046_01865451_01881353 NA other upstream 96922 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 492733 1539494 ~ 1668012 (+)
G195003 NA other upstream 894380 1161157 ~ 1161690 (+)
G194721 NA other upstream 1595725 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 382901 2442395 ~ 2457280 (+)
G196936 NA other downstream 1129979 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1886812 3943794 ~ 3945500 (+)
G197055 NA other downstream 2092407 4149423 ~ 4149780 (+)
G197121 NA other downstream 2313995 4371011 ~ 4371430 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025657 zc3h7a coding NC_007114.7 CM002887.2 43774369 ~ 43808322 (+)