G196080


Basic Information

Item Value
gene id G196080
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2082685 ~ 2083646 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222695
AAAAACTGAACGCTTATCTAGAGAGGAAAGGGATCTGCTCGTGCGCAAGGTTAAAGCATGCAAGCAGACCATCTACGGGACAAGCCGGATTCCACCAAAGCATTTTTATCTTTATGCACACAATAATAATCTTTTACAATTATCCTTTTATTTTTAATATTTGCCATGTTTGTGTGTGTAATAAGAAGAGTGTACGAGTGTTGTAGTCCCGCCTATAGGCGTGTATTACTAACACGCTCTTTAAATAAAAAAAAACAAACAAAAACAACAAAAAAAAAAACATTGCGCCTTTGACTTTAGACCAGGTTTCAGTTGGTCAATGGCGCAGTCGTTTTCAGTTGCCTCAAAATAGCAACACGCCAACAATGCGCCTGAACACACCTCGTTTTCAGACCAGCACGCCCATGGTTGCACAAATAGGTGCAAATGCATTTGTTCTTTAAACAACGTGGAGCTGGATGTGAAAATGAAAACTGCGTCGGGCTGAAACTAGCAAAAAACACTTGTGTTGCGCCAGGCGCCGCATTGCGCCGGGTGTATGATAAGGCCCAATATGTGTTTTATTAGACAGGTAAGCAACTGTTCGGATACATTTATCAACAAAAAATGAATCATTGTTATACAGCTCAACACAGTAAGTCTTATTGTTTAAATCTCATTTTCTTGATTTACTTCGAGTACCATGTTTTACCATGCCTAATATTGATCTAGTTTACTGCAGTGTGCAACAAGTGTCTCATAGTAGCTGCCGAGCGAACGCACAGAGTAGCATTATAACTACACATATGTATCTGATATGATAAAACAGCGCTGCATTACCTTACATACGCATGACCGGAAGAAGCGGAAGCGGCGACTGCAGCATAATAAAGGCTCCAATGCTCTCGAGCCGTGTGTCGCGCTTGTCTCTCATTAGCAATCGCTCCAGCGGCCTCGTTCCGCTCCAACGGCTTTCAGCCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222695 True 962 lncRNA 0.42 1 2082685 2083646

Neighbor

gene id symbol gene type direction distance location
CI01000046_02066859_02072868 NA coding upstream 9671 2066859 ~ 2073014 (+)
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding upstream 43630 2037421 ~ 2039716 (+)
CI01000046_02027256_02031337 RMI2 coding upstream 51234 2027154 ~ 2031451 (+)
CI01000046_02006028_02024639 NA coding upstream 57745 2006028 ~ 2024940 (+)
CI01000046_01988070_01995034 UBFD1 coding upstream 87355 1986320 ~ 1995330 (+)
CI01000046_02123765_02158243 AXIN1 coding downstream 40119 2123765 ~ 2158243 (+)
CI01000046_02264732_02268319 UNCX coding downstream 180926 2264572 ~ 2268638 (+)
CI01000046_02335530_02348525 NA coding downstream 250328 2333974 ~ 2348945 (+)
CI01000046_02356713_02359204 NA coding downstream 273008 2356654 ~ 2360009 (+)
CI01000046_02365658_02365816 NA coding downstream 282012 2365658 ~ 2366186 (+)
G196076 NA non-coding upstream 4205 2078122 ~ 2078480 (+)
G195981 NA non-coding upstream 25669 2056070 ~ 2057016 (+)
G195978 NA non-coding upstream 83591 1997123 ~ 1999094 (+)
CI01000046_01963803_01965901 NA non-coding upstream 114314 1963555 ~ 1968371 (+)
G196085 NA non-coding downstream 3163 2086809 ~ 2087131 (+)
G196086 NA non-coding downstream 3633 2087279 ~ 2087514 (+)
G196087 NA non-coding downstream 5078 2088724 ~ 2089219 (+)
G195994 NA non-coding downstream 22706 2106352 ~ 2110763 (+)
G196102 NA non-coding downstream 79637 2163283 ~ 2163494 (+)
CI01000046_01865451_01881353 NA other upstream 123537 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 519348 1539494 ~ 1668012 (+)
G195003 NA other upstream 920995 1161157 ~ 1161690 (+)
G194721 NA other upstream 1622340 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 356271 2442395 ~ 2457280 (+)
G196936 NA other downstream 1103349 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1860182 3943794 ~ 3945500 (+)
G197055 NA other downstream 2065777 4149423 ~ 4149780 (+)
G197121 NA other downstream 2287365 4371011 ~ 4371430 (+)

Expression


Co-expression Network