Gene
RNA
| Item | Value |
|---|---|
| gene id | G196141 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 2224506 ~ 2226140 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU222770 | True | 1635 | lncRNA | 0.35 | 1 | 2224506 | 2226140 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_02123765_02158243 | AXIN1 | coding | upstream | 66263 | 2123765 ~ 2158243 (+) |
| CI01000046_02066859_02072868 | NA | coding | upstream | 151492 | 2066859 ~ 2073014 (+) |
| CI01000046_02037519_02037782 | SNN, CP075, SNN.S, SNN.L | coding | upstream | 185451 | 2037421 ~ 2039716 (+) |
| CI01000046_02027256_02031337 | RMI2 | coding | upstream | 193055 | 2027154 ~ 2031451 (+) |
| CI01000046_02006028_02024639 | NA | coding | upstream | 199566 | 2006028 ~ 2024940 (+) |
| CI01000046_02264732_02268319 | UNCX | coding | downstream | 38432 | 2264572 ~ 2268638 (+) |
| CI01000046_02335530_02348525 | NA | coding | downstream | 107834 | 2333974 ~ 2348945 (+) |
| CI01000046_02356713_02359204 | NA | coding | downstream | 130514 | 2356654 ~ 2360009 (+) |
| CI01000046_02365658_02365816 | NA | coding | downstream | 139518 | 2365658 ~ 2366186 (+) |
| CI01000046_02451052_02454565 | MAFK | coding | downstream | 224912 | 2442395 ~ 2457280 (+) |
| G196142 | NA | non-coding | upstream | 1418 | 2220195 ~ 2223088 (+) |
| G196131 | NA | non-coding | upstream | 28653 | 2195643 ~ 2195853 (+) |
| G196128 | NA | non-coding | upstream | 41807 | 2182498 ~ 2182699 (+) |
| G196106 | NA | non-coding | upstream | 57918 | 2166269 ~ 2166588 (+) |
| G196102 | NA | non-coding | upstream | 61012 | 2163283 ~ 2163494 (+) |
| G196147 | NA | non-coding | downstream | 29255 | 2255395 ~ 2255629 (+) |
| G196154 | NA | non-coding | downstream | 36108 | 2262248 ~ 2262482 (+) |
| G196155 | NA | non-coding | downstream | 37001 | 2263141 ~ 2263375 (+) |
| G196156 | NA | non-coding | downstream | 37691 | 2263831 ~ 2264062 (+) |
| G196164 | NA | non-coding | downstream | 57398 | 2283538 ~ 2283766 (+) |
| CI01000046_01865451_01881353 | NA | other | upstream | 265358 | 1865451 ~ 1881369 (+) |
| CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 661169 | 1539494 ~ 1668012 (+) |
| G195003 | NA | other | upstream | 1062816 | 1161157 ~ 1161690 (+) |
| G194721 | NA | other | upstream | 1764161 | 458008 ~ 460345 (+) |
| G196936 | NA | other | downstream | 960855 | 3186995 ~ 3194271 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | other | downstream | 1717688 | 3943794 ~ 3945500 (+) |
| G197055 | NA | other | downstream | 1923283 | 4149423 ~ 4149780 (+) |
| G197121 | NA | other | downstream | 2144871 | 4371011 ~ 4371430 (+) |
