Item | Value |
---|---|
gene id | G196156 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000046 |
NCBI id | null |
chromosome length | 7063170 |
location | 2263831 ~ 2264062 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU222785 | True | 232 | lncRNA | 0.35 | 1 | 2263831 | 2264062 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000046_02123765_02158243 | AXIN1 | coding | upstream | 105588 | 2123765 ~ 2158243 (+) |
CI01000046_02066859_02072868 | NA | coding | upstream | 190817 | 2066859 ~ 2073014 (+) |
CI01000046_02037519_02037782 | SNN, CP075, SNN.S, SNN.L | coding | upstream | 224776 | 2037421 ~ 2039716 (+) |
CI01000046_02027256_02031337 | RMI2 | coding | upstream | 232380 | 2027154 ~ 2031451 (+) |
CI01000046_02006028_02024639 | NA | coding | upstream | 238891 | 2006028 ~ 2024940 (+) |
CI01000046_02264732_02268319 | UNCX | coding | downstream | 510 | 2264572 ~ 2268638 (+) |
CI01000046_02335530_02348525 | NA | coding | downstream | 69912 | 2333974 ~ 2348945 (+) |
CI01000046_02356713_02359204 | NA | coding | downstream | 92592 | 2356654 ~ 2360009 (+) |
CI01000046_02365658_02365816 | NA | coding | downstream | 101596 | 2365658 ~ 2366186 (+) |
CI01000046_02451052_02454565 | MAFK | coding | downstream | 186990 | 2442395 ~ 2457280 (+) |
G196155 | NA | non-coding | upstream | 456 | 2263141 ~ 2263375 (+) |
G196154 | NA | non-coding | upstream | 1349 | 2262248 ~ 2262482 (+) |
G196147 | NA | non-coding | upstream | 8202 | 2255395 ~ 2255629 (+) |
G196141 | NA | non-coding | upstream | 37691 | 2224506 ~ 2226140 (+) |
G196142 | NA | non-coding | upstream | 40743 | 2220195 ~ 2223088 (+) |
G196164 | NA | non-coding | downstream | 19476 | 2283538 ~ 2283766 (+) |
G196176 | NA | non-coding | downstream | 37364 | 2301426 ~ 2301796 (+) |
G196177 | NA | non-coding | downstream | 37793 | 2301855 ~ 2302078 (+) |
G196119 | NA | non-coding | downstream | 45758 | 2309820 ~ 2649187 (+) |
G196209 | NA | non-coding | downstream | 121688 | 2385750 ~ 2386244 (+) |
CI01000046_01865451_01881353 | NA | other | upstream | 304683 | 1865451 ~ 1881369 (+) |
CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 700494 | 1539494 ~ 1668012 (+) |
G195003 | NA | other | upstream | 1102141 | 1161157 ~ 1161690 (+) |
G194721 | NA | other | upstream | 1803486 | 458008 ~ 460345 (+) |
G196936 | NA | other | downstream | 922933 | 3186995 ~ 3194271 (+) |
CI01000046_03943890_03945302 | ATP5J2 | other | downstream | 1679766 | 3943794 ~ 3945500 (+) |
G197055 | NA | other | downstream | 1885361 | 4149423 ~ 4149780 (+) |
G197121 | NA | other | downstream | 2106949 | 4371011 ~ 4371430 (+) |