G196119


Basic Information

Item Value
gene id G196119
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2309820 ~ 2649187 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222743
ATGCACTGTGTGTTCTGACACCTTTCTATCAGAACCAGCATTAACTTCTTGAGCAGTTTGAGCTACAGGAGCTCGTCTGTTGGATCGGACCACACGGGCCAGCCTTCGCTGCCCACGTGCATCAATGAGCCTTGGCCGCCCATGACCCTGTCGCCGGTTCACCTCTGTTCCTTCCTTGGACCACTTTTGATAGATGCTGACCACTTTAGACCGGGAACACCCCACAAGAGCTGCAGTTTTGGAGATGCTCTGACCCAGTCGTCTAGCCATCACAATTTGACCCATTGTCAAACTCGCTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCTAACACATCAACTCTGAGGACAAATGTTCACTCGCTGCCTAATATATCCCACCCACTAACAGGTGCCATGATGAAGAGATAATCATTGTTATTCACTTCACCTGTCAGTGGTCATAATGTTACACCTGATCGGTGTATATATACATGCATTATAAAAACTGCTGGTTTAAAAACAGCCCAAGTTGGGTTAAAAATCGACAAACCCAGTAATTGGGTTGTTTTAACCCAGCAGTTGTTTTAACTCCAAAATGCTGGGAAGTTTAATTTAGCTGAACTATTGTTTAAAAATTACATGAATCTTATGAGCATATAACTCATATAACTTATGAGCATAACTGTACAATATACAGCTATATAGCAGTATACGGCAAAATCAGTGCCAGCTTGCACTGTGACATTATTTGTAAGAGCTCTATATTGTTTTGCCCATTACATCTGTATGGCAGGATAAATAAGGATCCTGTGAGATGCTGATCATCTCAATGTAAGAGTCAAATGGCTGCTTCTACTGCTCTATTAATAATTAGAGTAATTAGAGCTTGCTTGTTAATCGAGGCTCACTCGGGCCGAGAGAGGTAATGATGAAGAAAATAAATGTGAGTCGAGGCTGAGAGGCAGCTGTCACATGTTCATTACAGTGAGTGTGACTTCTCTCACTGCCGATGCTGATGAGCACATGGAGCTCTTCCATAGACACTGAGCTCTCATCTGTGTCCTCTTGTCACGGCCTGCAAGGAATCTGTGCCTGCTGAATTCCATAAAAAGATCAGAATTTAGCGTCATTCTGAAGTTTGATGCTTGTTTAATACATATTTTGGATAAATGATAATGCTTTCAGCTGTATATTTAGAAACATTTCTGTGGTAAAAAAAAGTCTGTTCAGGCCTTCCATTCTCATTTGCTGAGCCAAAATGATGACTTATACAGGACGATTTGTCTCAGTGTGGCCGTCAGATGCTCTCTAAATTCTTCCGCAGTGAAGTGATTGAGTGAAACAGGGCAGTTGTAGGATTTCAGTTTTAGGGAGGCTCAACCCCCTACCTGAGCATGAGCTGATATGGCTCAGGGGAGTATTTCTTGCTTTGAGTGCAATAGGCCATGAATTTGAATATTTTCAGTCAAGCGAGATTTGTAAATAAACATTAATATTGCATCTGTTTGTCAGGAGATGTATATCGGTATCGGCAGCATATTTGGCTTTATTTTATATTGTGTTTTCATATGAACGGAGAGCCCTCTGAATGGGAAATAACCTCAGATTGCAGTCGCTGCTTTCAGAGAGAGATCATATAATCATATAATAAGAGTACTGACAGCTGAGGTAATCACAGATTTTTAGGGAGACCGAGATGAAAGAAGTGTTTAATGGTGAATGTGTAATTTCTTTAGTTACAGCAAACAGAATTGCAAAAAATAATGACAATTTACAAGCAAGTTTCCTGAATATGCCTCCCATTTGCTATTGGATGATCAAACAGGTAGCCCCGCCCCAACCACTTGCCATTGGTTGAGCCCTTGTAGATGTGGTGAACAGAGTAATGTTTTGAAAGTGCCACAAAAACGCAGTGTTTAAACTTTTCTGAGACTCAGCGTACACTAATGGCTTACTTAGTACTCTCTGTAAATAAAGCAATTGTGAAATGGCTTAGTGCAATTATGAAATCGCGAAGGCTGCGATTTAAAGGACTGCTTCAGCTTTCATGTAGGAAATAGATGCACATTTAGAGGCAAGTATGCTGATATACACTGTGGGACAATAGGATGGTTTAAAGCTAAAGAGAGCACCTTGTCTTAGGCTGTAAGCACAACAACCATTTAAACCCGAGGCCATTCACCTCTAAAGTGGGATGTCTGACCATCTGCCATTGCTTTTTGTTGTAATTTAGGTATAAAGCTGTATATATCGGATAGATATTGCTTTGGCTTACAATATGAATGAACTCACTTTAATGCATTAATTGGTGATTTTATAAGGTCCGCACCTGTATCCAGACAGTAAGGTTGGTCATTGCTTGCATGCTGAGACTTGAGTACAAACACTAAGAGGCAAAGTAGACATGCTTAAGCCATTCACACCATAATCCTATGTAATCCTTAAAGGGCCATGTAACTTCTTTGGCACACGTACCTGCCATCTAAAACTTGGAGAACATATTGAGAAAAAGGTTACTACAAAGGCCAGGCGGCCTTAAAGCGACAGTTCACCTTTATGACATTCTAAACTTGTTTTACTTTCTTTCTTCTGCAGAACACAAAAGAAGATGTTTTGTTTTTTGTACAAATTAAAAAAGTCAAAGTCATTTTGCTTTTGGACCCCATTAACTTTCACTGTATATATATATATATATATATATAAACAGTAAAACATTTTATATTTATACAATTATATCCAATTTCATTTTTCTTCTTTTGTGTATGATATGAGGGCGAGTAAATGATGACAGAATTTTCATATCCCCCCAAAATGAAAATTCTGTAATCATTTACTCACCATCATGTTATTCCAAACCTGTATAACTTGCTTTTATTATTCTCCTATCATTTTTGTCCATCCATTGAAAGTCTTTGTCAATATTTGCAAGCTTAAAAAAAAAAAAAATCCTAAAGCGACTGTAGAAGTAACCCATATAACTTTATTGCTATTTTGTTTTATTATTGTTGCTTTTTTTAATTATTATTTCTTATATTTGTCTTATCATACTATTATTTAATGTTACATTTCACGGTTACATTTCACTCCAAGTTGTATTCTGTAATGTGAGGAATAAAAATCTTGAATCCTATGAGTTGAGTGGTTTAATAAGGCTTCTGAAGAGACACGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222743 True 3154 lncRNA 0.38 2 2309820 2649187

Neighbor

gene id symbol gene type direction distance location
CI01000046_02264732_02268319 UNCX coding upstream 41182 2264572 ~ 2268638 (+)
CI01000046_02123765_02158243 AXIN1 coding upstream 151577 2123765 ~ 2158243 (+)
CI01000046_02066859_02072868 NA coding upstream 236806 2066859 ~ 2073014 (+)
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding upstream 270765 2037421 ~ 2039716 (+)
CI01000046_02027256_02031337 RMI2 coding upstream 278369 2027154 ~ 2031451 (+)
CI01000046_02674254_02676647 ELFN1, ELFN1A coding downstream 24873 2674060 ~ 2676801 (+)
CI01000046_02794245_02796188 NA coding downstream 144692 2793879 ~ 2797088 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding downstream 219693 2868880 ~ 2871611 (+)
CI01000046_02911888_02930362 NA coding downstream 261958 2911145 ~ 2930993 (+)
CI01000046_02933552_02949246 NA coding downstream 284300 2933487 ~ 2949318 (+)
G196177 NA non-coding upstream 7742 2301855 ~ 2302078 (+)
G196176 NA non-coding upstream 8024 2301426 ~ 2301796 (+)
G196164 NA non-coding upstream 26054 2283538 ~ 2283766 (+)
G196156 NA non-coding upstream 45758 2263831 ~ 2264062 (+)
G196155 NA non-coding upstream 46445 2263141 ~ 2263375 (+)
G196123 NA non-coding downstream 101 2649288 ~ 2749966 (+)
G196687 NA non-coding downstream 115681 2764868 ~ 2765242 (+)
G196691 NA non-coding downstream 126184 2775371 ~ 2775660 (+)
G196703 NA non-coding downstream 142774 2791961 ~ 2792212 (+)
G196698 NA non-coding downstream 145183 2794370 ~ 2873461 (+)
CI01000046_01865451_01881353 NA other upstream 350672 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 746483 1539494 ~ 1668012 (+)
G195003 NA other upstream 1148130 1161157 ~ 1161690 (+)
G194721 NA other upstream 1849475 458008 ~ 460345 (+)
G196936 NA other downstream 537808 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1294641 3943794 ~ 3945500 (+)
G197055 NA other downstream 1500236 4149423 ~ 4149780 (+)
G197121 NA other downstream 1721824 4371011 ~ 4371430 (+)
G196869 NA other downstream 1766343 4415530 ~ 4421687 (+)

Expression


Co-expression Network