G196209


Basic Information

Item Value
gene id G196209
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2385750 ~ 2386244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222838
ATTTTGAGTTTCTTTCTAAAAAAGTAACTTTTTCTCTCCTGGGCTGGGCTTACTTGTTTTTTAATAACCAAAAAAAAAAAAAATTGGCAAATGTAAAGGCTCTTTCACACCCAAAGTGAATGCAAATTCACGCCTGTACAGTAGATGGCGCAGCTCAAACAAACCTTTCACCTTTCAGCTGTGCTGCCATTAGGGATTGCAGAAGAAAAGGTGTGAAGGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU222838 True 223 lncRNA 0.39 2 2385750 2386244

Neighbor

gene id symbol gene type direction distance location
CI01000046_02365658_02365816 NA coding upstream 19564 2365658 ~ 2366186 (+)
CI01000046_02356713_02359204 NA coding upstream 25741 2356654 ~ 2360009 (+)
CI01000046_02335530_02348525 NA coding upstream 36805 2333974 ~ 2348945 (+)
CI01000046_02264732_02268319 UNCX coding upstream 117112 2264572 ~ 2268638 (+)
CI01000046_02123765_02158243 AXIN1 coding upstream 227507 2123765 ~ 2158243 (+)
CI01000046_02451052_02454565 MAFK coding downstream 64808 2442395 ~ 2457280 (+)
CI01000046_02616123_02661535 NA coding downstream 229803 2616047 ~ 2661964 (+)
CI01000046_02674254_02676647 ELFN1, ELFN1A coding downstream 287816 2674060 ~ 2676801 (+)
CI01000046_02794245_02796188 NA coding downstream 407635 2793879 ~ 2797088 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding downstream 482636 2868880 ~ 2871611 (+)
G196177 NA non-coding upstream 83672 2301855 ~ 2302078 (+)
G196176 NA non-coding upstream 83954 2301426 ~ 2301796 (+)
G196164 NA non-coding upstream 101984 2283538 ~ 2283766 (+)
G196156 NA non-coding upstream 121688 2263831 ~ 2264062 (+)
G196155 NA non-coding upstream 122375 2263141 ~ 2263375 (+)
G196107 NA non-coding downstream 51606 2437850 ~ 2481044 (+)
G196122 NA non-coding downstream 251754 2637998 ~ 2689802 (+)
G196123 NA non-coding downstream 263044 2649288 ~ 2749966 (+)
G196687 NA non-coding downstream 378624 2764868 ~ 2765242 (+)
CI01000046_01865451_01881353 NA other upstream 426602 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 822413 1539494 ~ 1668012 (+)
G195003 NA other upstream 1224060 1161157 ~ 1161690 (+)
G194721 NA other upstream 1925405 458008 ~ 460345 (+)
G196936 NA other downstream 800751 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1557584 3943794 ~ 3945500 (+)
G197055 NA other downstream 1763179 4149423 ~ 4149780 (+)
G197121 NA other downstream 1984767 4371011 ~ 4371430 (+)

Expression


Co-expression Network