G196123


Basic Information

Item Value
gene id G196123
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2649288 ~ 2749966 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU222747
TAAACAGAAGCTCAGCTTTTACTTGCCTGATTCACAAGAACGAGGCTTGTTCTCACGTGTGACAAAAACATGTTTGAGCTTCTGTTTAGAATGTGAGCTTAAAAATTCTTACTTATTACTAAAACTGTCTTAGATATCATTATTTGTGTTCTGAGAATACGTCTAATGGGTGTGGAACAACATGATTGTGAGTAAATTTTCATTTTTGAGTGAACTATCCCTTTAAGATGTTCCAGTTAGACTGAATAGTTGAAAAGGTGAGGAATATTTGCACAGAATCCCTTAGTAACATAATTGCTTTATAAATTAAACCAGCTTTTAGTATCCACATCAAACTCAGGTTACACTCTGAGGAAACATGCTTTGTCAAACTATTATTTATTCATGTAGCATGCTTTTTTATGTGCTCTTGAAAGGGTCTGGTACAGCACTACAGGTTTTTAGCTGAATGGACTCGCAGGCCACGTTCTGCGGATGCAGATTAGAAGATGGAATGCTTTTTGGCGTCTCGGGCTTCGAGTACTCTCTCTCTCTCAGGCATGAGATGCAATAGTAATGGCTGTATAATGCCTACGGTGATCTCAGTGATGACATGAGATAGAGAGGTGTGAGGAAAGAGACGCTTTGTGTGAAGTGTGGAAAGTGCCATCTAGTGGCATTAAAGGCCTGCTCTTTCATCTTGCTTGGCACGTCATCATAGCTTGTCTTTATAGCTTGAAAGGACTTTCTCTCATGCATTTGTGAAAAAAAGAGCAATGCCATTAGATAGTTCGCCCTTAGCCATGCTGAATTTGTAAATTTGCATATGCACCTTTGACAAAAAGCTAGTTTGAGAGATTTCAGATCTGAAACTTCAGTCAAACTTTGACTTATTTTACACCTACGTTTAAACCAACCAATCTATCTATCTATCTATCTATCTATCTATCTATGTCTATCTATCAATTTCCTTATATTTTCCATGCTTACAAATGATCAGACTGAAATTGGAGTGGTGGTTAAAATGATCAACTAAGACCAGCTTCTGTTTGGAGAGTCTTAACTGAGGACTTTAAATGTTTGCTGCAACTGCTGTAAGGATTTAGAGGAAGTCAAGGGAAACACATTGTCAAGAGCCAATGAACTGTATTTCTGTAGGAGTGTAATAGTGTCGAGATTGATTAGATGTTGTCATCTGATATGGAGTCTTAGAGTCGCTGACTGTTTCTAAAGAAACAAATTTTACAAACTAACGCTTTTGAGGAAGAGACCCAAAAGAATTATTTACATACTTTAAAGAGCCTGTCACACAAGCTTAACTGATCTCTCATAAAGATGTCAAGATAAATTGCCCTCATAAGATTTGAAACTCAAACATCTTTGCTGAGCAATAAAGCTAGATGAGAAATTTAGTTTACTGTAATTGCCATAAACACAAAATTACCCCTAAACCTAACAATTTAGAATAAACAGCGTAGAAATCTTCTAATATTGTGGTGTCTTTGTTATTGCTGCCTGTTCTTTAGTAACAATATTTGATATTCGCATTAACAAGGTCATTCACACTGACAAAACAACTGAAAGTCTTTCAGTTTTAATGAGAGCTGTTGATTGCAGCAACTTGAGTGACTGTGATCGTGGCAACAAATTTTAACTTTATGCAGTTGAGAGGTGACAACTACAAATGGGAGAGCAGATGGTAAAGCTCAGGTGATCCACAGTGGATACAGTCGAAAGTCTTTTTTTTTTTTTTTTTTTTCATTTAAACATGAAATTATACTTAAAGTTTTAGGACTTTAAAGGATCAGTTCACTTCAGTATTCAAATTTCCTGATAATTTACTCACCCCCATGTCATCCAAGATGTTTATGTCTTTCTTATTTCAGTCGAAAAGAAATGAAGTTTCATTAACAAAGTTCGAGAGGAGCAACGTTTACATGATCTACCCAATCAGCATAAGAGGAGGCCTTTAAATATGTAGCTGACCGATGTTCCTCAACAGTTTTTTCTGCATCCCTCCACCACCCTGTCTCCTCACACTCACCTGGTTACTATCCTAACCAAAGATACGGGGGAAGGACTCTGGGTTCGGGCCAAATACCGAGCTTGGAGCCCTCTCCTCGGACAGCACGGCAAATACGTATTCTTTTACTCGTGAAATTAAGGTTTTTGAAGAAAACATTCCAGGATTTTTCTCCATATAGCGGACTTCAGTGGGGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222747 True 2202 lncRNA 0.37 3 2649288 2749966

Neighbor

gene id symbol gene type direction distance location
CI01000046_02451052_02454565 MAFK coding upstream 194617 2442395 ~ 2457280 (+)
CI01000046_02365658_02365816 NA coding upstream 283102 2365658 ~ 2366186 (+)
CI01000046_02356713_02359204 NA coding upstream 289279 2356654 ~ 2360009 (+)
CI01000046_02335530_02348525 NA coding upstream 300343 2333974 ~ 2348945 (+)
CI01000046_02264732_02268319 UNCX coding upstream 380650 2264572 ~ 2268638 (+)
CI01000046_02794245_02796188 NA coding downstream 43913 2793879 ~ 2797088 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding downstream 118914 2868880 ~ 2871611 (+)
CI01000046_02911888_02930362 NA coding downstream 161179 2911145 ~ 2930993 (+)
CI01000046_02933552_02949246 NA coding downstream 183521 2933487 ~ 2949318 (+)
CI01000046_02981176_03006650 NA coding downstream 230861 2980827 ~ 3006675 (+)
G196119 NA non-coding upstream 101 2309820 ~ 2649187 (+)
G196107 NA non-coding upstream 168244 2437850 ~ 2481044 (+)
G196209 NA non-coding upstream 263044 2385750 ~ 2386244 (+)
G196177 NA non-coding upstream 347210 2301855 ~ 2302078 (+)
G196687 NA non-coding downstream 14902 2764868 ~ 2765242 (+)
G196691 NA non-coding downstream 25405 2775371 ~ 2775660 (+)
G196703 NA non-coding downstream 41995 2791961 ~ 2792212 (+)
G196698 NA non-coding downstream 44404 2794370 ~ 2873461 (+)
G196744 NA non-coding downstream 191182 2941148 ~ 2941489 (+)
CI01000046_01865451_01881353 NA other upstream 690140 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1085951 1539494 ~ 1668012 (+)
G195003 NA other upstream 1487598 1161157 ~ 1161690 (+)
G194721 NA other upstream 2188943 458008 ~ 460345 (+)
G196936 NA other downstream 437029 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1193862 3943794 ~ 3945500 (+)
G197055 NA other downstream 1399457 4149423 ~ 4149780 (+)
G197121 NA other downstream 1621045 4371011 ~ 4371430 (+)
G196869 NA other downstream 1665564 4415530 ~ 4421687 (+)

Expression


Co-expression Network