Gene
RNA
| Item | Value |
|---|---|
| gene id | G196691 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 2775371 ~ 2775660 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU223343 | False | 290 | lncRNA | 0.51 | 1 | 2775371 | 2775660 |
| TU223345 | True | 276 | lncRNA | 0.51 | 1 | 2775385 | 2775660 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_02674254_02676647 | ELFN1, ELFN1A | coding | upstream | 98570 | 2674060 ~ 2676801 (+) |
| CI01000046_02616123_02661535 | NA | coding | upstream | 113407 | 2616047 ~ 2661964 (+) |
| CI01000046_02451052_02454565 | MAFK | coding | upstream | 320700 | 2442395 ~ 2457280 (+) |
| CI01000046_02365658_02365816 | NA | coding | upstream | 409185 | 2365658 ~ 2366186 (+) |
| CI01000046_02356713_02359204 | NA | coding | upstream | 415362 | 2356654 ~ 2360009 (+) |
| CI01000046_02794245_02796188 | NA | coding | downstream | 18219 | 2793879 ~ 2797088 (+) |
| CI01000046_02868880_02871348 | NUDT1, 8ODP | coding | downstream | 93220 | 2868880 ~ 2871611 (+) |
| CI01000046_02911888_02930362 | NA | coding | downstream | 135485 | 2911145 ~ 2930993 (+) |
| CI01000046_02933552_02949246 | NA | coding | downstream | 157827 | 2933487 ~ 2949318 (+) |
| CI01000046_02981176_03006650 | NA | coding | downstream | 205167 | 2980827 ~ 3006675 (+) |
| G196687 | NA | non-coding | upstream | 10129 | 2764868 ~ 2765242 (+) |
| G196123 | NA | non-coding | upstream | 25405 | 2649288 ~ 2749966 (+) |
| G196122 | NA | non-coding | upstream | 85569 | 2637998 ~ 2689802 (+) |
| G196107 | NA | non-coding | upstream | 294327 | 2437850 ~ 2481044 (+) |
| G196703 | NA | non-coding | downstream | 16301 | 2791961 ~ 2792212 (+) |
| G196698 | NA | non-coding | downstream | 18710 | 2794370 ~ 2873461 (+) |
| G196744 | NA | non-coding | downstream | 165488 | 2941148 ~ 2941489 (+) |
| G196749 | NA | non-coding | downstream | 190528 | 2966188 ~ 2966536 (+) |
| G196754 | NA | non-coding | downstream | 205918 | 2981578 ~ 2981812 (+) |
| CI01000046_01865451_01881353 | NA | other | upstream | 816223 | 1865451 ~ 1881369 (+) |
| CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 1212034 | 1539494 ~ 1668012 (+) |
| G195003 | NA | other | upstream | 1613681 | 1161157 ~ 1161690 (+) |
| G194721 | NA | other | upstream | 2315026 | 458008 ~ 460345 (+) |
| G196936 | NA | other | downstream | 411335 | 3186995 ~ 3194271 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | other | downstream | 1168168 | 3943794 ~ 3945500 (+) |
| G197055 | NA | other | downstream | 1373763 | 4149423 ~ 4149780 (+) |
| G197121 | NA | other | downstream | 1595351 | 4371011 ~ 4371430 (+) |
| G196869 | NA | other | downstream | 1639870 | 4415530 ~ 4421687 (+) |
