Gene
RNA
| Item | Value |
|---|---|
| gene id | G196698 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 2794370 ~ 2873461 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU223357 | True | 1709 | lncRNA | 0.33 | 2 | 2794370 | 2873461 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_02674254_02676647 | ELFN1, ELFN1A | coding | upstream | 117569 | 2674060 ~ 2676801 (+) |
| CI01000046_02616123_02661535 | NA | coding | upstream | 132406 | 2616047 ~ 2661964 (+) |
| CI01000046_02451052_02454565 | MAFK | coding | upstream | 339699 | 2442395 ~ 2457280 (+) |
| CI01000046_02365658_02365816 | NA | coding | upstream | 428184 | 2365658 ~ 2366186 (+) |
| CI01000046_02356713_02359204 | NA | coding | upstream | 434361 | 2356654 ~ 2360009 (+) |
| CI01000046_02911888_02930362 | NA | coding | downstream | 37684 | 2911145 ~ 2930993 (+) |
| CI01000046_02933552_02949246 | NA | coding | downstream | 60026 | 2933487 ~ 2949318 (+) |
| CI01000046_02981176_03006650 | NA | coding | downstream | 107366 | 2980827 ~ 3006675 (+) |
| CI01000046_03041320_03042564 | GRIFIN | coding | downstream | 167859 | 3041320 ~ 3042750 (+) |
| CI01000046_03046400_03047689 | NA | coding | downstream | 172318 | 3045779 ~ 3048432 (+) |
| G196703 | NA | non-coding | upstream | 2158 | 2791961 ~ 2792212 (+) |
| G196691 | NA | non-coding | upstream | 18710 | 2775371 ~ 2775660 (+) |
| G196687 | NA | non-coding | upstream | 29128 | 2764868 ~ 2765242 (+) |
| G196123 | NA | non-coding | upstream | 44404 | 2649288 ~ 2749966 (+) |
| G196122 | NA | non-coding | upstream | 104568 | 2637998 ~ 2689802 (+) |
| G196744 | NA | non-coding | downstream | 67687 | 2941148 ~ 2941489 (+) |
| G196749 | NA | non-coding | downstream | 92727 | 2966188 ~ 2966536 (+) |
| G196754 | NA | non-coding | downstream | 108117 | 2981578 ~ 2981812 (+) |
| G196757 | NA | non-coding | downstream | 116703 | 2990164 ~ 2990436 (+) |
| G196773 | NA | non-coding | downstream | 143004 | 3016465 ~ 3016713 (+) |
| CI01000046_01865451_01881353 | NA | other | upstream | 835222 | 1865451 ~ 1881369 (+) |
| CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 1231033 | 1539494 ~ 1668012 (+) |
| G195003 | NA | other | upstream | 1632680 | 1161157 ~ 1161690 (+) |
| G194721 | NA | other | upstream | 2334025 | 458008 ~ 460345 (+) |
| G196936 | NA | other | downstream | 313534 | 3186995 ~ 3194271 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | other | downstream | 1070367 | 3943794 ~ 3945500 (+) |
| G197055 | NA | other | downstream | 1275962 | 4149423 ~ 4149780 (+) |
| G197121 | NA | other | downstream | 1497550 | 4371011 ~ 4371430 (+) |
| G196869 | NA | other | downstream | 1542069 | 4415530 ~ 4421687 (+) |
