G196780



Basic Information


Item Value
gene id G196780
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3023159 ~ 3023393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU223439
GTGTCAAATCAGAGATGATTCCTCTAACACACGTGTGGACCATCACTCCAGACATGACACACACAAGCAGAACTTCAGGGCTATTGAATTAAGGCTTGCCGTCTGGCCTGCAGGCTTCAGTGCACAAGGGTCATTATCTCCATGTGGACAGTCACAACATAACAGCTTAGAAGAAATCCAAATACCACCGTGGGACCTTTACGGCTTGTTGGTCACACTGTACTTTAAAACTGGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU223439 True 235 lncRNA 0.47 1 3023159 3023393

Neighbor


gene id symbol gene type direction distance location
CI01000046_02981176_03006650 NA coding upstream 16484 2980827 ~ 3006675 (+)
CI01000046_02933552_02949246 NA coding upstream 73841 2933487 ~ 2949318 (+)
CI01000046_02911888_02930362 NA coding upstream 92166 2911145 ~ 2930993 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding upstream 151548 2868880 ~ 2871611 (+)
CI01000046_02794245_02796188 NA coding upstream 226071 2793879 ~ 2797088 (+)
CI01000046_03041320_03042564 GRIFIN coding downstream 17927 3041320 ~ 3042750 (+)
CI01000046_03046400_03047689 NA coding downstream 22386 3045779 ~ 3048432 (+)
CI01000046_03138487_03139142 NA coding downstream 115094 3138487 ~ 3140879 (+)
CI01000046_03205894_03253907 NA coding downstream 182199 3205592 ~ 3254330 (+)
CI01000046_03347042_03438271 SDK1, SDK1A coding downstream 323649 3347042 ~ 3438271 (+)
G196773 NA non-coding upstream 6446 3016465 ~ 3016713 (+)
G196757 NA non-coding upstream 32723 2990164 ~ 2990436 (+)
G196754 NA non-coding upstream 41347 2981578 ~ 2981812 (+)
G196749 NA non-coding upstream 56623 2966188 ~ 2966536 (+)
G196744 NA non-coding upstream 81670 2941148 ~ 2941489 (+)
G196809 NA non-coding downstream 19798 3043191 ~ 3043482 (+)
G196784 NA non-coding downstream 59540 3082933 ~ 3084120 (+)
G196975 NA non-coding downstream 539104 3562497 ~ 3563548 (+)
CI01000046_02451052_02454565 MAFK other upstream 565879 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1064011 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1459822 1539494 ~ 1668012 (+)
G195003 NA other upstream 1861469 1161157 ~ 1161690 (+)
G194721 NA other upstream 2562814 458008 ~ 460345 (+)
G196936 NA other downstream 163602 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 920435 3943794 ~ 3945500 (+)
G197055 NA other downstream 1126030 4149423 ~ 4149780 (+)
G197121 NA other downstream 1347618 4371011 ~ 4371430 (+)
G196869 NA other downstream 1392137 4415530 ~ 4421687 (+)

Expression



Co-expression Network