XLOC_009397 (arhgef28b)


Basic Information

Item Value
gene id XLOC_009397
gene name arhgef28b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35004547 ~ 35031523 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018475
ATGCAGGCTTGGCTCAACAACACCAGTCAGGATGAAGATGAGGAGCTCTTGTCATCTGATGACTCCGGTATAATGTTTGTTTATCTCTGCCCACTGgcagatttaggaatttttaaagGCAGGGGCCAAGatGAGCTCACAACTGACTCAACAAACAGTTCGCTCACCATTACAAACAGCATCAACACTCTGCAGGCTGGTGAGGATCAGgCAATTTATCCTCAGGACTCAATTGATTTTGAGTCAGACTCTACAGCATCTGGACAAGACTCTCCCATGCAAGACCATTTTCCCATCAATAGTCCACAGGACGATAGAATTGAATTAtggaattttaattttaaagtgacTAATAGTTTGCAatactgttttttgtttgtttgtttgttttcagatcCATTCCCCTTCAATGATGAAGAAACATCTAGAGAGATCAGAAGTATGTGGCACAGCAAGTCAGAGGAGGATGAGAAAGAGAAGTTCATTCCTACATCCAAAAGCGAGACGGAGAAATATAAAGTGAGTCGAACACTAAGCTTCCTCAGGAGCCGAATGGTCAacaccaaaataaaaaacaagGTAAATGCAGATGTTTCCTCAGCCTTGCACCAGCTCTGCTCACTGCAGGAGCCTGTTAATACAGCTTGTGAAGTCTGTGAGGATGTGAACAGTGATGAACCACAGCAGTGCACATATTCATCAGCTCAGATTTCGTTTGACTACTCTGCTGAATCGTGGAGTGCAGTTGTAGACGCTGAATTCAGCAGGACACTTGAGAAAGAGGTGGTCAAGAGACAGGAGATCATCTATGGTCAtgttgtgtttgtggtAGAGCTGATGCAGACAGAATTTCACCACGTCCAGACGCTCACCGTTATGGCTGATGTTTTGAGACGGGGACTGCAGGAGGACGTGCAGGTGGAGCAGGACGTCATCAGTCAGATTTTCCCCAGGCTGGACGAGCTCTTAGCTTTGCATAGGAACTTTCTTTTAGACATGGAGACCAGACAGAGGGCTTCTGTTTACCCAGGAGAGCACAAGAACTACATCATCCAGCAAATCGGCCCAAATGCGTCTCAGATGATAGAGTTATATGGCGACTTCTGCAGTCAGCATCCAGAAGCGCTGAAGATTTATAAGCAGCAGTTGCAGAACAACAGGAAACTGCAGTTATTTCTCAGACAGCAGAGCACCAAATCTGTCATCAAACGCCGCGAAATCCCAGAATTCCTTTTGCTCGTGACTCAGAGAATCACAAAGTACCCTGTTCTGATAGAGAGACTCCTTCAACACACTGATGATGGCAGTGGCGAGCATTATGACATTGCAATGTCACTTGAGGGTCTGCGTGCGGTGATAGAGGAGGTGGACCGGCGTGTGGGACAATACGAGCGCTCAAAGAAGCTGCAGGACATTATCAGTCGACTGGACAACAAGAGCTGCACTCGTCTGAAGAACGGAGAGATCTTCGGCAAACAAGACCTGCAGAAATCACACCGAACTCTCACTCACTCCTCAGTGCTGACATGCAGGACGACCTCTGGCAGACTCAGAGATGTTCTGGCATTGCTCCTCACAGACGTTCTGGCTTTCCTTCAGGAAAAAGAGCAGAAGTTTGTCTTTGCTGCATTGGAGCAGAAACCCTCTGTGATGCCCTTGCGAAGGCTCATTGTGAGGGAAATAGCCAATCAGGAGCGAGGATTATTTCTCATCAGCAGTGACTGCTCTGGGGGGCCGGAGATGTACGAGATTCACACACAGACGCGCGAGGAGCGCAACACATGGATGACACTGCTGAGACAGGCAGCGGAGAGTCTTCCAGATGACCAAACCAAGAAGAATGAGGGGGAAATTAAAGTCAAGAAGATACAGAAACTGCAAGAGGCGCTGTTTTCACTGGACCTGCAGGTGTGCTCAGTCATCGAGGAGAAGTTAAGGATCTGCAGAGGCACTGGTGGTAGATGGAATCTGGCTAGCTGTCGCCTTCTCGTTCAACCCCATCCTGAAAACACCCCTCAGTGTGTCACATTACTGTCTGACGCACAGGAAGAGGTGGTGAAGCTGGCTGTCACCTTGCTGTCTTGGCTTTTCCCGTGCATATTGTCACCAAGTACCCCTGACAGCTTTAGAGAGGAAAGAGGAAACTATAATGAACACAATTTGCCAAGTAGGAGCAGGAGTAGCGGTCTGGTAGGAACAGGGGTCGGCCCTCTCTTAATGGCCCCGATAAACCCTGCCCCTCACATTTATTTAAAGGTAGCGGAGGGTGTTCACAACTTAATCCATATACTCTACAGTCTGCAGGCTGCTATAATAATCCAGGACAGCTGCTTTGAAGTTCAAAATCTCCTCCTCCTGGAGGGAGAAGCTCCACCCCCAGGTCTTACCAGTGATTATGATGTCAAAAGGCAGAGTTTGGAGTATGGCGTTGGTGGCTGCGGGACTGCGGCCGTGCAACAGAATGAActggagcagagagagagagagcatactGAACTAATGGACAGACTGACCAAAGAGAAAGAGCAGTTTGAGGAGGAGCTGCGGCTGTTTGAGGAGGAGATGAAGAAGCTGAGAGAGGAGGAGAAGAGAGtgaaggaagagagagagagattaaagGAGGAGGGCAAGAAAGTGTCGAAAGAGAAGAAGAGTCTGGAGACAAAGATAAGACTCATTCAAAATCCAAATCCTCGTCaaatcatcctgccttgtatcacaCCACAGGAGAAATAA

Function

symbol description
arhgef28b Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rho protein signal transduction. Predicted to be located in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018475 True 2736 mRNA 0.48 21 35004547 35031523

Neighbor

gene id symbol gene type direction distance location
XLOC_009396 dhx16 coding downstream 69763 34899645 ~ 34934784 (-)
XLOC_009395 rnf183 coding downstream 111852 34886480 ~ 34892695 (-)
XLOC_009394 BX629344.1 coding downstream 118923 34881013 ~ 34885624 (-)
XLOC_009393 mgat1a coding downstream 126159 34867518 ~ 34878388 (-)
XLOC_009392 sh3bp5la coding downstream 138328 34854025 ~ 34866219 (-)
XLOC_009398 bloc1s3 coding upstream 4845 35036368 ~ 35126632 (-)
XLOC_009399 si:ch211-272b8.7 coding upstream 99098 35130621 ~ 35134918 (-)
XLOC_009400 agfg1a coding upstream 124891 35156414 ~ 35212462 (-)
XLOC_009401 mrpl44 coding upstream 183023 35214546 ~ 35224481 (-)
XLOC_009402 mff coding upstream 195150 35226673 ~ 35252548 (-)
XLOC_009389 NA non-coding downstream 397141 34602522 ~ 34607406 (-)
XLOC_009383 FP017158.1 non-coding downstream 725012 34279421 ~ 34279535 (-)
XLOC_009376 CR855379.2 non-coding downstream 1116880 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding downstream 1127216 33869579 ~ 33877331 (-)
XLOC_009371 NA non-coding downstream 1322869 33665924 ~ 33681678 (-)
XLOC_009404 CR848683.2 non-coding upstream 382943 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 non-coding upstream 409217 35440740 ~ 35468800 (-)
XLOC_009406 NA non-coding upstream 582711 35614234 ~ 35675985 (-)
XLOC_009407 NA non-coding upstream 730158 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 non-coding upstream 748517 35780040 ~ 35780805 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_02578572_02587575 NA coding CI01000095 null 2578572 ~ 2587575 (-)