G196885


Basic Information

Item Value
gene id G196885
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3622712 ~ 3642563 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU223546
CCTAAGCTTCTTTAGTCCAGTAAATGCTCATCTTAAAATATTAATAACAATATAAATGTTATTCTACATTTACTTTATAAAAATCATTAAAGATTTCACAGTAAAAAGAAACATGTATCGCAACCTAAGGGGGACATTTTTTTTTTTTTTTGGTGTGTAGTATACGTCATTTATTTCTAGCAGACCATTTACATAAAATTCTCCTTTTAATTTAACTCCTCTCCAGTTTCTCTGGAGAGCCAGAACATCTTGATCAACCGTAACACACTGCTGGGGTGCCAGCTTTGGCATAGATTTTTTTTTCTTAAAAAAACAAACAAAAAGAAAACAAAGATCCTAACCCCCTTTTCCATTAGTGTTTTTTCCATTTTTAAGAGTGTCACACATCAGTTCACACCACTGCTCAGTGCTTTTTTTTTTTTTTTTTTATTTAAAAACTTTCAGAAGTGTTATCGGAAATCTCCTTGTTAGTCTTCAAGCTGCATTGCTTGTGCTGTGTCATGCTAGATCGGTGCGAGTTTTACATGATCCGCAGGCCCTGGATTGAAGAC

Function

NR:

description
PREDICTED: stAR-related lipid transfer protein 3

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU223546 True 551 lncRNA 0.34 2 3622712 3642563

Neighbor

gene id symbol gene type direction distance location
CI01000046_03596032_03605678 AP5Z1 coding upstream 16866 3595468 ~ 3605846 (+)
CI01000046_03572743_03591418 FOXK1 coding upstream 31259 3570743 ~ 3591453 (+)
CI01000046_03556534_03559710 CYP3C1, CYP3C2, CYP3C3, CYP3C4 coding upstream 62875 3556206 ~ 3559837 (+)
CI01000046_03544999_03551574 CYP3C4 coding upstream 70815 3544999 ~ 3551897 (+)
CI01000046_03511698_03542614 SDK1, SDK1A coding upstream 79868 3511405 ~ 3542844 (+)
CI01000046_03680288_03699097 SMURF1 coding downstream 37725 3680288 ~ 3699097 (+)
CI01000046_03712603_03713730 NA coding downstream 69909 3712472 ~ 3714191 (+)
CI01000046_03721265_03754551 RNF216 coding downstream 78119 3720682 ~ 3754781 (+)
CI01000046_03794654_03799486 ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB coding downstream 151157 3793720 ~ 3800026 (+)
CI01000046_03887074_03887701 NA coding downstream 244347 3886910 ~ 3888039 (+)
G196975 NA non-coding upstream 59164 3562497 ~ 3563548 (+)
CI01000046_03205894_03253907 NA non-coding upstream 383376 3205592 ~ 3254330 (+)
CI01000046_03138487_03139142 NA non-coding upstream 481833 3138487 ~ 3140879 (+)
G196784 NA non-coding upstream 538592 3082933 ~ 3084120 (+)
G196809 NA non-coding upstream 579230 3043191 ~ 3043482 (+)
G196846 NA non-coding downstream 1620 3644183 ~ 3644698 (+)
G196994 NA non-coding downstream 129279 3771842 ~ 3772078 (+)
G196887 NA non-coding downstream 248457 3891020 ~ 3891841 (+)
G197024 NA non-coding downstream 272021 3914584 ~ 3914837 (+)
G197039 NA non-coding downstream 308022 3950585 ~ 3950828 (+)
G196936 NA other upstream 428441 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1165432 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1663564 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2059375 1539494 ~ 1668012 (+)
G195003 NA other upstream 2461022 1161157 ~ 1161690 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 301265 3943794 ~ 3945500 (+)
G197055 NA other downstream 506860 4149423 ~ 4149780 (+)
G197121 NA other downstream 728448 4371011 ~ 4371430 (+)
G196869 NA other downstream 772967 4415530 ~ 4421687 (+)
G197352 NA other downstream 1631819 5259318 ~ 5276453 (+)

Expression


Co-expression Network