Gene
RNA
| Item | Value |
|---|---|
| gene id | G196857 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 3638909 ~ 3641270 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: cyclin-dependent kinase 12 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU223518 | True | 2272 | lncRNA | 0.39 | 2 | 3638909 | 3641270 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_03624314_03633087 | WIPI2 | coding | upstream | 5708 | 3624314 ~ 3633201 (+) |
| CI01000046_03596032_03605678 | AP5Z1 | coding | upstream | 33063 | 3595468 ~ 3605846 (+) |
| CI01000046_03572743_03591418 | FOXK1 | coding | upstream | 47456 | 3570743 ~ 3591453 (+) |
| CI01000046_03556534_03559710 | CYP3C1, CYP3C2, CYP3C3, CYP3C4 | coding | upstream | 79072 | 3556206 ~ 3559837 (+) |
| CI01000046_03544999_03551574 | CYP3C4 | coding | upstream | 87012 | 3544999 ~ 3551897 (+) |
| CI01000046_03680288_03699097 | SMURF1 | coding | downstream | 39018 | 3680288 ~ 3699097 (+) |
| CI01000046_03712603_03713730 | NA | coding | downstream | 71202 | 3712472 ~ 3714191 (+) |
| CI01000046_03721265_03754551 | RNF216 | coding | downstream | 79412 | 3720682 ~ 3754781 (+) |
| CI01000046_03794654_03799486 | ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB | coding | downstream | 152450 | 3793720 ~ 3800026 (+) |
| CI01000046_03887074_03887701 | NA | coding | downstream | 245640 | 3886910 ~ 3888039 (+) |
| G196975 | NA | non-coding | upstream | 75361 | 3562497 ~ 3563548 (+) |
| CI01000046_03205894_03253907 | NA | non-coding | upstream | 399573 | 3205592 ~ 3254330 (+) |
| CI01000046_03138487_03139142 | NA | non-coding | upstream | 498030 | 3138487 ~ 3140879 (+) |
| G196784 | NA | non-coding | upstream | 554789 | 3082933 ~ 3084120 (+) |
| G196809 | NA | non-coding | upstream | 595427 | 3043191 ~ 3043482 (+) |
| G196846 | NA | non-coding | downstream | 2913 | 3644183 ~ 3644698 (+) |
| G196994 | NA | non-coding | downstream | 130572 | 3771842 ~ 3772078 (+) |
| G196887 | NA | non-coding | downstream | 249750 | 3891020 ~ 3891841 (+) |
| G197024 | NA | non-coding | downstream | 273314 | 3914584 ~ 3914837 (+) |
| G197039 | NA | non-coding | downstream | 309315 | 3950585 ~ 3950828 (+) |
| G196936 | NA | other | upstream | 444638 | 3186995 ~ 3194271 (+) |
| CI01000046_02451052_02454565 | MAFK | other | upstream | 1181629 | 2442395 ~ 2457280 (+) |
| CI01000046_01865451_01881353 | NA | other | upstream | 1679761 | 1865451 ~ 1881369 (+) |
| CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 2075572 | 1539494 ~ 1668012 (+) |
| G195003 | NA | other | upstream | 2477219 | 1161157 ~ 1161690 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | other | downstream | 302558 | 3943794 ~ 3945500 (+) |
| G197055 | NA | other | downstream | 508153 | 4149423 ~ 4149780 (+) |
| G197121 | NA | other | downstream | 729741 | 4371011 ~ 4371430 (+) |
| G196869 | NA | other | downstream | 774260 | 4415530 ~ 4421687 (+) |
| G197352 | NA | other | downstream | 1633112 | 5259318 ~ 5276453 (+) |
