Gene
RNA
| Item | Value |
|---|---|
| gene id | G196887 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 3891020 ~ 3891841 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU223548 | True | 822 | lncRNA | 0.39 | 1 | 3891020 | 3891841 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_03887074_03887701 | NA | coding | upstream | 2981 | 3886910 ~ 3888039 (+) |
| CI01000046_03794654_03799486 | ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB | coding | upstream | 90994 | 3793720 ~ 3800026 (+) |
| CI01000046_03721265_03754551 | RNF216 | coding | upstream | 136239 | 3720682 ~ 3754781 (+) |
| CI01000046_03712603_03713730 | NA | coding | upstream | 176829 | 3712472 ~ 3714191 (+) |
| CI01000046_03680288_03699097 | SMURF1 | coding | upstream | 191923 | 3680288 ~ 3699097 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | coding | downstream | 51953 | 3943794 ~ 3945500 (+) |
| CI01000046_03953528_03957334 | PDAP1B, PDAP1 | coding | downstream | 61264 | 3953105 ~ 3957695 (+) |
| CI01000046_03959320_03963204 | SHMT1 | coding | downstream | 66707 | 3958548 ~ 3963204 (+) |
| CI01000046_03964744_03965521 | SHMT1 | coding | downstream | 72903 | 3964744 ~ 3965543 (+) |
| CI01000046_03971520_03980002 | TOP3A | coding | downstream | 79679 | 3971520 ~ 3980102 (+) |
| G196994 | NA | non-coding | upstream | 118942 | 3771842 ~ 3772078 (+) |
| G196846 | NA | non-coding | upstream | 246322 | 3644183 ~ 3644698 (+) |
| G196885 | NA | non-coding | upstream | 248457 | 3622712 ~ 3642563 (+) |
| G196857 | NA | non-coding | upstream | 249750 | 3638909 ~ 3641270 (+) |
| G196975 | NA | non-coding | upstream | 327472 | 3562497 ~ 3563548 (+) |
| G197024 | NA | non-coding | downstream | 22743 | 3914584 ~ 3914837 (+) |
| G197039 | NA | non-coding | downstream | 58744 | 3950585 ~ 3950828 (+) |
| G196871 | NA | non-coding | downstream | 234157 | 4125998 ~ 4126444 (+) |
| G196867 | NA | non-coding | downstream | 235036 | 4126877 ~ 4127188 (+) |
| G197051 | NA | non-coding | downstream | 235772 | 4127613 ~ 4128009 (+) |
| G196936 | NA | other | upstream | 696749 | 3186995 ~ 3194271 (+) |
| CI01000046_02451052_02454565 | MAFK | other | upstream | 1433740 | 2442395 ~ 2457280 (+) |
| CI01000046_01865451_01881353 | NA | other | upstream | 1931872 | 1865451 ~ 1881369 (+) |
| CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 2327683 | 1539494 ~ 1668012 (+) |
| G195003 | NA | other | upstream | 2729330 | 1161157 ~ 1161690 (+) |
| G197055 | NA | other | downstream | 257582 | 4149423 ~ 4149780 (+) |
| G197121 | NA | other | downstream | 479170 | 4371011 ~ 4371430 (+) |
| G196869 | NA | other | downstream | 523689 | 4415530 ~ 4421687 (+) |
| G197352 | NA | other | downstream | 1382541 | 5259318 ~ 5276453 (+) |
