XLOC_000094 (alkbh5)


Basic Information

Item Value
gene id XLOC_000094
gene name alkbh5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8508753 ~ 8516595 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000185
GCGAGCGATTCAAGCAACAAGCACTTGTAAGCCTGTATCCTCTCGAAGCTAGTGGTGGCGTAGCTGTGCTACGTGCTAAATGTTTTGGGGCAGAAGCGCAGGGAGACGCCGCCTGTGATTGACAGCACACTCACCGCGTTGCGTTGCTGATTCAGTCGGGTTGCTCCTGGAATGGGGCAGTGGAAACTTTAGTTGGCTTAAATTTGTACCAGGAGAGAAGAGGAAGCAGGCGGCACCGCTCTGGGCCTTCGGTCACGTCGCGCACGACTCCAGTGACCGACACTAATATTATAACATGGGGACCTGAGGCGAATTCAGGTTCAACAACATTTTGCAGCAATATTTCGGACTTTGCTCTTGAAAATGGCCGGATTTACCGATCTGCGAGAGAAGCTCAAGTCGATGACACCGCACAGGGACAAAGTTTTCGAGTACAGCAACGGCGAGAAGCGCAAATACCGCGAGTCGGATGATGACGAGAGCGAGTACGAGGAGCGGCGGGACGCGGAGGCGCGCAGAGTCAAGAGCGGCATTAAACAGGCGAGTATCTTCACGCTGGAGGAGTGCGCGCGCATCGAGGCCAAGATAGACGAGGTGGTCGCCAAGGCAGACAAGGGGCTGTACCGGGAGCACACGGTGGACCGGGCGCCCCTGCGAAACAAGTACTTTTTCGGGGAGGGGTACACGTACGGCGCGCAGCTGGAGAAGCGCGGACCCGGGCAGGAGCGGCTGTACTCCAAAGGAGAGGTGGACGATATCCCGGACTGGGTGCACGAGCTGGTCATCGATCGCCTCGTGACGCACGGTGTTATCCCGGAGGGTTTTGTAAATAGCGCTGTGATCAATGACTACCAGCCCGGAGGCTGCATCGTGTCCCACGTGGATCCCATCCACATCTTTGAGCGGCCAATAGTGTCCGTGTCCTTCTTCAGCGACAGCGCGCTCTGCTTCGGCTGCAAGTTTCTCTTCAAGCCGATCCGCGTGTCCGAGCCCGTGCTGCACCTGCCCGTGCGCCGCGGCAGCGTCACAGTCCTCAGTGGCTACGCAGCTGATGACATCACACACTGCATCCGCCCACAGGACATCAAGGAGAGGCGAGCCGTCATCATTCTGAGAAAAACAAGGGCGGATGCTCCTCGCCTAGACTCCAACTCTCTGAGTCCATCCATCGTCTCTCCTAAAAGACGGCACATCCTCAAAGCCAAGCGCTCGCATCGCAAGGCTGACCCCGATGCTGCACACagGCCTCGTGTTTTAGAGATGGACAAAGAGCTGCAGAGGCGTTCGCTCTCGTCCCGGCAGAGACGCCACGATGACGGCAGCTCCGAAAACTCCTGGAGGAGAGCAGACGACAGAGAGCCCGCCGCGCGCTACACACACGATCACGCACCCACACGGCGAGTCAAAATGAGACGCCACTGAACTCAGGCTGGGTGAACTCGAGGACACAGACACTCGCTGCTTTACTTATCTATTCAGACATATCAAAAATGAAACTTCGAGACCCACTTTATTTTGTTCTGTGTTCAAAGGAAATAAAAGGACATCGAAACTGA

Function

symbol description
alkbh5 Enables oxidative RNA demethylase activity. Predicted to be involved in several processes, including RNA metabolic process; mRNA export from nucleus; and response to hypoxia. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human ALKBH5 (alkB homolog 5, RNA demethylase).

GO:

id name namespace
GO:0035553 oxidative single-stranded RNA demethylation biological_process
GO:0006397 mRNA processing biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0007283 spermatogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0035515 oxidative RNA demethylase activity molecular_function
GO:1990931 RNA N6-methyladenosine dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-061013-602 Enables oxidative RNA demethylase activity. Predicted to be involved in several processes, including RNA metabolic process; mRNA export from nucleus; and response to hypoxia. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human ALKBH5 (alkB homolog 5, RNA demethylase).

Ensembl:

ensembl_id ENSDARG00000063003

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000185 True 1556 mRNA 0.56 4 8508753 8516595

Neighbor

gene id symbol gene type direction distance location
XLOC_000093 myo15ab coding upstream 1523 8442071 ~ 8507230 (+)
XLOC_000092 cacna1hb coding upstream 104748 8304904 ~ 8404005 (+)
XLOC_000091 SLC5A10 coding upstream 345586 8110562 ~ 8163167 (+)
XLOC_000090 CR855320.2 coding upstream 519439 7988052 ~ 7989314 (+)
XLOC_000089 CR855320.1 coding upstream 547057 7956030 ~ 7961696 (+)
XLOC_000095 mief2 coding downstream 4728 8521323 ~ 8532009 (+)
XLOC_000096 smcr8b coding downstream 18103 8534698 ~ 8540050 (+)
XLOC_000097 NA coding downstream 57182 8573777 ~ 8575057 (+)
XLOC_000098 AL928650.2 coding downstream 58712 8575307 ~ 8577274 (+)
XLOC_000099 AL928650.4 coding downstream 62602 8579197 ~ 8586066 (+)
XLOC_000087 NA non-coding upstream 834524 7672121 ~ 7674229 (+)
XLOC_000084 NA non-coding upstream 995991 7512529 ~ 7512762 (+)
XLOC_000082 CABZ01075319.1 non-coding upstream 1392839 7092273 ~ 7115914 (+)
XLOC_000081 CU929161.1 non-coding upstream 1444810 7063837 ~ 7063943 (+)
XLOC_000080 NA non-coding upstream 1518726 6956913 ~ 6990027 (+)
XLOC_000100 NA non-coding downstream 70635 8587230 ~ 8590636 (+)
XLOC_000105 NA non-coding downstream 434279 8950874 ~ 8965939 (+)
XLOC_000106 NA non-coding downstream 450884 8967479 ~ 8976422 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00373895_00378177 ALKBH5 coding CI01000300 null 373895 ~ 378403 (+)