XLOC_009400 (agfg1a)


Basic Information

Item Value
gene id XLOC_009400
gene name agfg1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35156414 ~ 35212462 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018487
AAAGACCCTCCTCTCTTCACTACCGTTGTTCGAGAAACGTGAGGCCCTTCTGAAGAACTCCGGTCCGTCTCCCGGTAATCCGTTTCAAAGGAAGTTCCGTTGGTTACTCTTTCCCCAGGACACTTACTggatcttttaaatatatcacttGTTTTAACTGACTAACGCTATATTAACGGCTCCGGCCATGGCAGCGAGCGCGAAGCGAAAACAGGAGGAAAAACACCTGAAGATGCTGCGAGAAATGACGAGTTTGGCGCCCAACCGAAAGTGCTTCGACTGCGACCAGCGCGGGCCGACCTACGCCAACATGACGGTGGGCTCGTTCGTCTGCACGTCCTGCTCTGGCATCCTACGTGGCCTGAATCCCCCTCACAGAGTGAAGTCCATCTCCATGACGACTTTCACGCAACAGGAAATAGAACTTCTACAGAAGCATGGAAATGAGGTATGTAAACAGATATGGCTCGGCCTCTATGACGACCGGAACTTGGCCATCCCAGACTTCAGAGAGCCTCAGAAAGTCAAAGAGTTTCTTCAGGACAAATACGAAAAGAAGAGATGGTATGTTCCTCCAGAGCAGGCAAAGACTGTGGCATCGGTTCATGCGTCGATCTCTGGTTCGTCTGCTAGCAGCACCAGCAGCACTCCAGAGGTCCGACCTCTTAAAACTTTACTGGGGGAGTCAGTGCCCAGTTTACACCTCAACAAAAACACACCTAGCCAGTCTCCAGTTGTGTCCCGCGCTCAGCTGGCCCATCAGCAGTATCAGGACAGGAAGTTTGATCTGCTCAGTGATCTGGGTGGTGACATTTTTGCGCCTCCACACTCACAGTCCACAGGCAACGCAAACTTTGCCAACTTTGCACATTTCAACAGTCATTCGGCGCAGAGCGTGAATGCTAGCGCAGACTTTGCGAATTTTGATACGTTCAAAAGTTCTGCTGCTCCAACCACAGCAGCATTTCCATCAGCTCCACAGGCTCCATTTCAGCCCCCACAACCAgGTAGTTCATCAGGACTATCTAATGCAAACTTTGCGAATTTCGATAACTTCCACAAATCGTGCAGTGCTGATTTCCCCTCATTCAGCTCCAGCCAGAGTAACTCAGTGGGAGATGTGCATAAAGCGGATGCAGTGAGTGTCCCTGCAGACCGATACGCGGCTCTCGCAGACCTCGACAACATTTTCAGTTCCAAACCTGAGCAAGGTCCAAGTTCAGCTCCTCCGTCAGCAGGTGTGGGTCCTCCACCTCCACAGGCCGCTCTGTTGGGTGGTGATCGCTACGCTGCTTTCGCTGAACTGGACAATGTCTTCGGGCCCTCAGTGCCAAATGTGAGCGGCTACCAAGCGGCCACTACAGCACAAGGGGCTGTTTATGGAACCTCTTCAGCTGTTCCTACTGCTCAAGCACAACAGGGTTTACCCAACATCCCTCAGGGTTTTGCAGgtCCTTCAACGAATCCATTCGTCGCTCCAGGGGCTCCACAGGCCCCTCCCACTAACCCGTTCCAGGCCAATGGGAGAGCAGCAGTACCTGGAATGGGTGTGGCTGCAGCAGCCTCTTTCGGTCCTCCGTCAATGAGTATGCCCACTGGCTTTGGAAACACTGCCGCCTACAACCTTCCCACCAGCTACAGCGGAAACTTCCAGCAGGCCTTTCCTGGACAGCCGTTCAACCAGCCGCATGCTTATCCTCAACAACCCAACGGAGGTTTTGCTGCTTTTGGTCAGGGTAAAGTCACTCCATTTGGACAGAACATGGTGGGACAAGCAGTAACCAATAATCCCTTCCTGGCGGGGGCGCCAGCAGCACAGTTTCCTGCAGGAGGTTCCACCACAAACCCCTTCTTATAGCGCACGTTTAGCCTGCGGTGGCCGACCTGCAACTCGACCGCACATCTTGCACTGTTTTGTTTCCCAAGTagctttaaaaaaacaagactttccTAACggatttttattgaattttaaaaaCAGAAGACTGAAAAAGACACCAGTGGAATAAATACACAATTTCTGATTACAgacacagaaaacaaaacatgttgCAGAGAAAAGGagctctttttttcttcttcttcttcttttaactttttagctCCTTTTGTCATTCCTGTGAACTGGCCTGGGCTGGAAAGCATCTGCACCATGCTGCGGATTTAATAAGTTATTGCAAACCTCCCGAATCATGTTAATGCTGCAATTCTGTATATAATTCTTTCATAGAAATTGCTCAATTTTAGGTCTTTGTGCATATCAGTATTTGTATCTCTAACACAGAAAACACATGCTGCATATACGGCGTCGACGTCCGCCATGCTGTGAATAACATTACGCAAGAATGTGGAatctttttggacatttttagtGTCGCCTTTTTGTGCTTTTGgagtttttgaaaatgatgcaaaaaaaaatgttttctccgTTATGAGGAGTTTTGAAGACTCTTTTTGGATGTCAACTCATGAGACTTTGACTCAAGACCACTTATGTTACAGAAATCTAagttaatgtgtatatatatataaataaatatatatactatatatattaaaaagaattTTATCTAAAAAA
>TCONS_00018488
CCTGAAGATGCTGCGAGAAATGACGAGTTTGGCGCCCAACCGAAAGTGCTTCGACTGCGACCAGCGCGGGCCGACCTACGCCAACATGACGGTGGGCTCGTTCGTCTGCACGTCCTGCTCTGGCATCCTACGTGGCCTGAATCCCCCTCACAGAGTGAAGTCCATCTCCATGACGACTTTCACGCAACAGGAAATAGAACTTCTACAGAAGCATGGAAATGAGGTATGTAAACAGATATGGCTCGGCCTCTATGACGACCGGAACTTGGCCATCCCAGACTTCAGAGAGCCTCAGAAAGTCAAAGAGTTTCTTCAGGACAAATACGAAAAGAAGAGATGGTATGTTCCTCCAGAGCAGGCAAAGACTGTGGCATCGGTTCATGCGTCGATCTCTGGTTCGTCTGCTAGCAGCACCAGCAGCACTCCAGAGGTCCGACCTCTTAAAACTTTACTGGGGGAGTCAGTGCCCAGTTTACACCTCAACAAAAACACACCTAGCCAGTCTCCAGTTGTGTCCCGCGCTCAGCTGGCCCATCAGCAGTATCAGGACAGGAAGTTTGATCTGCTCAGTGATCTGGGTGGTGACATTTTTGCGCCTCCACACTCACAGTCCACAGGCAACGCAAACTTTGCCAACTTTGCACATTTCAACAGTCATTCGGAGCGTGAATGCTAGCGCAGACTTTGCGAATTTTGATACGTTCAAAAGTTCTGCTGCTCCAACCACAGCAGCATTTCCATCAGCTCCACAGGCTCCATTTCAGCCCCCACAACCAgGTAGTTCA

Function

symbol description
agfg1a Predicted to enable GTPase activator activity and metal ion binding activity. Is expressed in intermediate cell mass of mesoderm and ventral mesoderm. Orthologous to human AGFG1 (ArfGAP with FG repeats 1).

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5808 Predicted to enable GTPase activator activity and metal ion binding activity. Is expressed in intermediate cell mass of mesoderm and ventral mesoderm. Orthologous to human AGFG1 (ArfGAP with FG repeats 1).

Ensembl:

ensembl_id ENSDARG00000030020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018487 False 2581 mRNA 0.48 13 35156414 35212462
TCONS_00018488 True 785 nonsense_mediated_decay 0.52 7 35167295 35212237

Neighbor

gene id symbol gene type direction distance location
XLOC_009399 si:ch211-272b8.7 coding downstream 21496 35130621 ~ 35134918 (-)
XLOC_009398 bloc1s3 coding downstream 29782 35036368 ~ 35126632 (-)
XLOC_009397 arhgef28b coding downstream 124891 35004547 ~ 35031523 (-)
XLOC_009396 dhx16 coding downstream 221630 34899645 ~ 34934784 (-)
XLOC_009395 rnf183 coding downstream 263719 34886480 ~ 34892695 (-)
XLOC_009401 mrpl44 coding upstream 2084 35214546 ~ 35224481 (-)
XLOC_009402 mff coding upstream 14211 35226673 ~ 35252548 (-)
XLOC_009403 mecom coding upstream 160445 35372907 ~ 35410860 (-)
XLOC_009404 CR848683.2 coding upstream 202004 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 coding upstream 228278 35440740 ~ 35468800 (-)
XLOC_009389 NA non-coding downstream 549008 34602522 ~ 34607406 (-)
XLOC_009383 FP017158.1 non-coding downstream 876879 34279421 ~ 34279535 (-)
XLOC_009376 CR855379.2 non-coding downstream 1268747 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding downstream 1279083 33869579 ~ 33877331 (-)
XLOC_009371 NA non-coding downstream 1474736 33665924 ~ 33681678 (-)
XLOC_009406 NA non-coding upstream 401772 35614234 ~ 35675985 (-)
XLOC_009407 NA non-coding upstream 549219 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 non-coding upstream 567578 35780040 ~ 35780805 (-)

Expression


Co-expression Network