G197039



Basic Information


Item Value
gene id G197039
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3950585 ~ 3950828 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU223703
GTTACAACTCCCTAATCTTTTATGGTATTTTAAGGCAGCCCAACTGAAATCAGCATGTGGTTCTCTGGCTCATCTCATATTCCATTGGTTCAGAAAAAAACAAAACAAAACAAAACAAAAAACCCTCAAACAAAATTCATCTAAGACAGAAGATAGCAGACCTTTATGCAGAGAAAACACTGATGTCTTTTGAAACCTTAAGAGAAAGACGCATAATTTCATATGATCTAAGACTCAGTAAGCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU223703 True 244 lncRNA 0.35 1 3950585 3950828

Neighbor


gene id symbol gene type direction distance location
CI01000046_03943890_03945302 ATP5J2 coding upstream 5213 3943794 ~ 3945500 (+)
CI01000046_03887074_03887701 NA coding upstream 62546 3886910 ~ 3888039 (+)
CI01000046_03794654_03799486 ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB coding upstream 150559 3793720 ~ 3800026 (+)
CI01000046_03721265_03754551 RNF216 coding upstream 195804 3720682 ~ 3754781 (+)
CI01000046_03712603_03713730 NA coding upstream 236394 3712472 ~ 3714191 (+)
CI01000046_03953528_03957334 PDAP1B, PDAP1 coding downstream 2277 3953105 ~ 3957695 (+)
CI01000046_03959320_03963204 SHMT1 coding downstream 7720 3958548 ~ 3963204 (+)
CI01000046_03964744_03965521 SHMT1 coding downstream 13916 3964744 ~ 3965543 (+)
CI01000046_03971520_03980002 TOP3A coding downstream 20692 3971520 ~ 3980102 (+)
CI01000046_03982069_03996142 FLII, FLII.S coding downstream 31241 3982069 ~ 3997163 (+)
G197024 NA non-coding upstream 35748 3914584 ~ 3914837 (+)
G196887 NA non-coding upstream 58744 3891020 ~ 3891841 (+)
G196994 NA non-coding upstream 178507 3771842 ~ 3772078 (+)
G196846 NA non-coding upstream 305887 3644183 ~ 3644698 (+)
G196885 NA non-coding upstream 308022 3622712 ~ 3642563 (+)
G196871 NA non-coding downstream 175170 4125998 ~ 4126444 (+)
G196867 NA non-coding downstream 176049 4126877 ~ 4127188 (+)
G197051 NA non-coding downstream 176785 4127613 ~ 4128009 (+)
G196870 NA non-coding downstream 177677 4128505 ~ 4128795 (+)
G197052 NA non-coding downstream 183460 4134288 ~ 4137233 (+)
G196936 NA other upstream 756314 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1493305 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1991437 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2387248 1539494 ~ 1668012 (+)
G197055 NA other downstream 198595 4149423 ~ 4149780 (+)
G197121 NA other downstream 420183 4371011 ~ 4371430 (+)
G196869 NA other downstream 464702 4415530 ~ 4421687 (+)
G197352 NA other downstream 1323554 5259318 ~ 5276453 (+)
G197528 NA other downstream 1775293 5726121 ~ 5742684 (+)

Expression



Co-expression Network