Item | Value |
---|---|
gene id | G196871 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000046 |
NCBI id | null |
chromosome length | 7063170 |
location | 4125998 ~ 4126444 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU223532 | True | 447 | lncRNA | 0.52 | 1 | 4125998 | 4126444 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000046_04098044_04120141 | LLGL1 | coding | upstream | 5646 | 4096231 ~ 4120352 (+) |
CI01000046_04081845_04083512 | NA | coding | upstream | 42463 | 4081721 ~ 4083535 (+) |
CI01000046_04040958_04080846 | NA | coding | upstream | 44679 | 4040023 ~ 4081319 (+) |
CI01000046_04024795_04028000 | DRG2 | coding | upstream | 97998 | 4024551 ~ 4028000 (+) |
CI01000046_03998572_04009276 | ZNF598 | coding | upstream | 115782 | 3998572 ~ 4010216 (+) |
CI01000046_04274035_04275654 | B9D1 | coding | downstream | 147408 | 4273852 ~ 4275762 (+) |
CI01000046_04308380_04317709 | GRAP, GRAPA | coding | downstream | 181936 | 4308380 ~ 4317970 (+) |
CI01000046_04319601_04326459 | NA | coding | downstream | 193157 | 4319601 ~ 4326532 (+) |
CI01000046_04478947_04510165 | ARHGAP23A | coding | downstream | 352503 | 4478947 ~ 4511125 (+) |
CI01000046_04532653_04542785 | PLCD3, PLCD3A | coding | downstream | 406209 | 4532653 ~ 4542785 (+) |
G197039 | NA | non-coding | upstream | 175170 | 3950585 ~ 3950828 (+) |
G197024 | NA | non-coding | upstream | 211161 | 3914584 ~ 3914837 (+) |
G196887 | NA | non-coding | upstream | 234157 | 3891020 ~ 3891841 (+) |
G196994 | NA | non-coding | upstream | 353920 | 3771842 ~ 3772078 (+) |
G196846 | NA | non-coding | upstream | 481300 | 3644183 ~ 3644698 (+) |
G196867 | NA | non-coding | downstream | 433 | 4126877 ~ 4127188 (+) |
G197051 | NA | non-coding | downstream | 1169 | 4127613 ~ 4128009 (+) |
G196870 | NA | non-coding | downstream | 2061 | 4128505 ~ 4128795 (+) |
G197052 | NA | non-coding | downstream | 7844 | 4134288 ~ 4137233 (+) |
G197053 | NA | non-coding | downstream | 12202 | 4138646 ~ 4139099 (+) |
CI01000046_03943890_03945302 | ATP5J2 | other | upstream | 180498 | 3943794 ~ 3945500 (+) |
G196936 | NA | other | upstream | 931727 | 3186995 ~ 3194271 (+) |
CI01000046_02451052_02454565 | MAFK | other | upstream | 1668718 | 2442395 ~ 2457280 (+) |
CI01000046_01865451_01881353 | NA | other | upstream | 2166850 | 1865451 ~ 1881369 (+) |
CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 2562661 | 1539494 ~ 1668012 (+) |
G197055 | NA | other | downstream | 22979 | 4149423 ~ 4149780 (+) |
G197121 | NA | other | downstream | 244567 | 4371011 ~ 4371430 (+) |
G196869 | NA | other | downstream | 289086 | 4415530 ~ 4421687 (+) |
G197352 | NA | other | downstream | 1147938 | 5259318 ~ 5276453 (+) |
G197528 | NA | other | downstream | 1599677 | 5726121 ~ 5742684 (+) |