G197058


Basic Information

Item Value
gene id G197058
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4166123 ~ 4166464 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU223723
ATATTCAATCCCCATACTCAAGGTGTTGATAAGGATGGCAATCATAATTCCTCGATTAAAGTATTTGCTATCCACTATGCGTGTCAATCGGTCCCGGAAGTCCTCCCAGTACTGAGCCAGGCGGTTACGCTCCTCCAGTATTTTATGATGGGGTGCACGGCTGGGTTTGAACTCTGCTCCATGGGAGAACTCGTACACCACGTCCCCTTCTGATCTGGAGTAGTCTGAATCTCCGAGCTCCAGATCCAAGTTCTCCAGGGCCCTTGTGCAATAGGGGCAACTCAGGAGCTCAAGAAGCAACTGACTGGGCACCACACCAGCTATCTGCAACAGCACACGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU223723 True 342 lncRNA 0.51 1 4166123 4166464

Neighbor

gene id symbol gene type direction distance location
CI01000046_04098044_04120141 LLGL1 coding upstream 45771 4096231 ~ 4120352 (+)
CI01000046_04081845_04083512 NA coding upstream 82588 4081721 ~ 4083535 (+)
CI01000046_04040958_04080846 NA coding upstream 84804 4040023 ~ 4081319 (+)
CI01000046_04024795_04028000 DRG2 coding upstream 138123 4024551 ~ 4028000 (+)
CI01000046_03998572_04009276 ZNF598 coding upstream 155907 3998572 ~ 4010216 (+)
CI01000046_04274035_04275654 B9D1 coding downstream 107388 4273852 ~ 4275762 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding downstream 141916 4308380 ~ 4317970 (+)
CI01000046_04319601_04326459 NA coding downstream 153137 4319601 ~ 4326532 (+)
CI01000046_04478947_04510165 ARHGAP23A coding downstream 312483 4478947 ~ 4511125 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding downstream 366189 4532653 ~ 4542785 (+)
G197061 NA non-coding upstream 3335 4162587 ~ 4162788 (+)
G197060 NA non-coding upstream 4610 4161309 ~ 4161513 (+)
G197056 NA non-coding upstream 14156 4151723 ~ 4151967 (+)
G197054 NA non-coding upstream 22146 4142416 ~ 4143977 (+)
G197053 NA non-coding upstream 27024 4138646 ~ 4139099 (+)
G197062 NA non-coding downstream 1652 4168116 ~ 4168421 (+)
G197057 NA non-coding downstream 2485 4168949 ~ 4169652 (+)
G197063 NA non-coding downstream 4495 4170959 ~ 4171342 (+)
G197064 NA non-coding downstream 5923 4172387 ~ 4172634 (+)
G197059 NA non-coding downstream 6551 4173015 ~ 4173584 (+)
G197055 NA other upstream 16343 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 220623 3943794 ~ 3945500 (+)
G196936 NA other upstream 971852 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1708843 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 2206975 1865451 ~ 1881369 (+)
G197121 NA other downstream 204547 4371011 ~ 4371430 (+)
G196869 NA other downstream 249066 4415530 ~ 4421687 (+)
G197352 NA other downstream 1107918 5259318 ~ 5276453 (+)
G197528 NA other downstream 1559657 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2653474 6808507 ~ 6821543 (+)

Expression


Co-expression Network