G197068



Basic Information


Item Value
gene id G197068
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4185707 ~ 4236672 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU223733
CGATACACCACTCAGACTGGCACTTGAGGTCCTCACATGGCTGGAACATGCCCAGAGTCACACAGTTCAAGAGAATCACCAGCATGCTCACATGCTCAAACCATGGGTTGCAAACCATCCTGAGACACCAGCTACGTGGACGAGTGGTCTGTTTGATGCAGAAGAACACCACAGGTGCAAGCATCGGGTAGGGGGGCTGCTCCTCCTCATCGGAGACCAAATCCGGAGTGGGGTCCCGGGCCCCAGACCCCTGTGCCTGAGAGCTCTCATGGACCGGGATCCATGTGCTGCTCTTTTCCTCCTCATCGCCGATCTCTTCACTGGGACCGGGCGCCCGGTACAGGGCTGAAATGGGAACTCTTACCTCTCCTCTCTCCAAGTAATGAAAGTGTTCTCTCCCCTCGCCATCAGTCATGATAAAG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU223733 True 422 lncRNA 0.56 2 4185707 4236672

Neighbor


gene id symbol gene type direction distance location
CI01000046_04098044_04120141 LLGL1 coding upstream 65355 4096231 ~ 4120352 (+)
CI01000046_04081845_04083512 NA coding upstream 102172 4081721 ~ 4083535 (+)
CI01000046_04040958_04080846 NA coding upstream 104388 4040023 ~ 4081319 (+)
CI01000046_04024795_04028000 DRG2 coding upstream 157707 4024551 ~ 4028000 (+)
CI01000046_03998572_04009276 ZNF598 coding upstream 175491 3998572 ~ 4010216 (+)
CI01000046_04274035_04275654 B9D1 coding downstream 37180 4273852 ~ 4275762 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding downstream 71708 4308380 ~ 4317970 (+)
CI01000046_04319601_04326459 NA coding downstream 82929 4319601 ~ 4326532 (+)
CI01000046_04478947_04510165 ARHGAP23A coding downstream 242275 4478947 ~ 4511125 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding downstream 295981 4532653 ~ 4542785 (+)
G197067 NA non-coding upstream 1451 4183864 ~ 4184256 (+)
G197066 NA non-coding upstream 6771 4178716 ~ 4178936 (+)
G197065 NA non-coding upstream 9060 4176432 ~ 4176647 (+)
G197059 NA non-coding upstream 12123 4173015 ~ 4173584 (+)
G197064 NA non-coding upstream 13073 4172387 ~ 4172634 (+)
G197069 NA non-coding downstream 1845 4238517 ~ 4238805 (+)
G197095 NA non-coding downstream 7778 4244450 ~ 4244889 (+)
G197099 NA non-coding downstream 18582 4255254 ~ 4255462 (+)
G197103 NA non-coding downstream 30806 4267478 ~ 4267872 (+)
G196861 NA non-coding downstream 40758 4277430 ~ 4280227 (+)
G197055 NA other upstream 35927 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 240207 3943794 ~ 3945500 (+)
G196936 NA other upstream 991436 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1728427 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 2226559 1865451 ~ 1881369 (+)
G197121 NA other downstream 134339 4371011 ~ 4371430 (+)
G196869 NA other downstream 178858 4415530 ~ 4421687 (+)
G197352 NA other downstream 1037710 5259318 ~ 5276453 (+)
G197528 NA other downstream 1489449 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2583266 6808507 ~ 6821543 (+)

Expression



Co-expression Network