Item | Value |
---|---|
gene id | G197068 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000046 |
NCBI id | null |
chromosome length | 7063170 |
location | 4185707 ~ 4236672 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU223733 | True | 422 | lncRNA | 0.56 | 2 | 4185707 | 4236672 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000046_04098044_04120141 | LLGL1 | coding | upstream | 65355 | 4096231 ~ 4120352 (+) |
CI01000046_04081845_04083512 | NA | coding | upstream | 102172 | 4081721 ~ 4083535 (+) |
CI01000046_04040958_04080846 | NA | coding | upstream | 104388 | 4040023 ~ 4081319 (+) |
CI01000046_04024795_04028000 | DRG2 | coding | upstream | 157707 | 4024551 ~ 4028000 (+) |
CI01000046_03998572_04009276 | ZNF598 | coding | upstream | 175491 | 3998572 ~ 4010216 (+) |
CI01000046_04274035_04275654 | B9D1 | coding | downstream | 37180 | 4273852 ~ 4275762 (+) |
CI01000046_04308380_04317709 | GRAP, GRAPA | coding | downstream | 71708 | 4308380 ~ 4317970 (+) |
CI01000046_04319601_04326459 | NA | coding | downstream | 82929 | 4319601 ~ 4326532 (+) |
CI01000046_04478947_04510165 | ARHGAP23A | coding | downstream | 242275 | 4478947 ~ 4511125 (+) |
CI01000046_04532653_04542785 | PLCD3, PLCD3A | coding | downstream | 295981 | 4532653 ~ 4542785 (+) |
G197067 | NA | non-coding | upstream | 1451 | 4183864 ~ 4184256 (+) |
G197066 | NA | non-coding | upstream | 6771 | 4178716 ~ 4178936 (+) |
G197065 | NA | non-coding | upstream | 9060 | 4176432 ~ 4176647 (+) |
G197059 | NA | non-coding | upstream | 12123 | 4173015 ~ 4173584 (+) |
G197064 | NA | non-coding | upstream | 13073 | 4172387 ~ 4172634 (+) |
G197069 | NA | non-coding | downstream | 1845 | 4238517 ~ 4238805 (+) |
G197095 | NA | non-coding | downstream | 7778 | 4244450 ~ 4244889 (+) |
G197099 | NA | non-coding | downstream | 18582 | 4255254 ~ 4255462 (+) |
G197103 | NA | non-coding | downstream | 30806 | 4267478 ~ 4267872 (+) |
G196861 | NA | non-coding | downstream | 40758 | 4277430 ~ 4280227 (+) |
G197055 | NA | other | upstream | 35927 | 4149423 ~ 4149780 (+) |
CI01000046_03943890_03945302 | ATP5J2 | other | upstream | 240207 | 3943794 ~ 3945500 (+) |
G196936 | NA | other | upstream | 991436 | 3186995 ~ 3194271 (+) |
CI01000046_02451052_02454565 | MAFK | other | upstream | 1728427 | 2442395 ~ 2457280 (+) |
CI01000046_01865451_01881353 | NA | other | upstream | 2226559 | 1865451 ~ 1881369 (+) |
G197121 | NA | other | downstream | 134339 | 4371011 ~ 4371430 (+) |
G196869 | NA | other | downstream | 178858 | 4415530 ~ 4421687 (+) |
G197352 | NA | other | downstream | 1037710 | 5259318 ~ 5276453 (+) |
G197528 | NA | other | downstream | 1489449 | 5726121 ~ 5742684 (+) |
CI01000046_06808895_06820945 | GSPT1, ERF3B, GSPT1L | other | downstream | 2583266 | 6808507 ~ 6821543 (+) |