XLOC_009405 (CR848683.1)


Basic Information

Item Value
gene id XLOC_009405
gene name CR848683.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35440740 ~ 35468800 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018497
ttgatcacAATTCGAcaaatttctgaaggatcattcgacactgaagactggatcataaaaaaataaacaaacctttagtcagcctatatatatatatatatatgacatttgTGACTgttcaaactttttatttaaaataagctgaaacaacatatatatatatatatatatatatatatatatatatatatatatatatataaaagcatttttgcaaACATTCTCATTCTTTCCAAAAATAAACTTTGGATCCACTTAAAATaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaacaagggagaaaaactgaagctacaatataaaaaaaagaaatgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagcaagggagaaaaactgaagctacaatataaaaaaagaaatgaaaggtAGAAGAAAGAGtgaaggaagaaaaaaacaagaattaacaggagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097135

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018497 True 605 lncRNA 0.25 3 35440740 35468800

Neighbor

gene id symbol gene type direction distance location
XLOC_009403 mecom coding downstream 29880 35372907 ~ 35410860 (-)
XLOC_009402 mff coding downstream 188192 35226673 ~ 35252548 (-)
XLOC_009401 mrpl44 coding downstream 216259 35214546 ~ 35224481 (-)
XLOC_009400 agfg1a coding downstream 228278 35156414 ~ 35212462 (-)
XLOC_009399 si:ch211-272b8.7 coding downstream 305822 35130621 ~ 35134918 (-)
XLOC_009406 NA coding upstream 145434 35614234 ~ 35675985 (-)
XLOC_009407 NA coding upstream 292881 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 coding upstream 311240 35780040 ~ 35780805 (-)
XLOC_009409 irs1 coding upstream 419749 35888549 ~ 35930070 (-)
XLOC_009410 col4a4 coding upstream 483088 35951888 ~ 36055401 (-)
XLOC_009389 NA non-coding downstream 833334 34602522 ~ 34607406 (-)
XLOC_009383 FP017158.1 non-coding downstream 1161205 34279421 ~ 34279535 (-)
XLOC_009376 CR855379.2 non-coding downstream 1553073 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding downstream 1563409 33869579 ~ 33877331 (-)
XLOC_009371 NA non-coding downstream 1759062 33665924 ~ 33681678 (-)
XLOC_009415 NA non-coding upstream 952791 36421591 ~ 36437846 (-)
XLOC_009416 NA non-coding upstream 1031406 36500206 ~ 36503189 (-)

Expression


Co-expression Network