G197112


Basic Information

Item Value
gene id G197112
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4357157 ~ 4358481 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU223779
TAGCACATATTTATATTAAAAAAATCTATACAAAAAACTAATTTCAACTTAAGTTTTGCCTGACAACAGAGACAGAAGTGACTGAGTCACAGCAGGTTTACTTTGTAAGTCATAGTATGCTGCTGTAATATGGCCACATACATAACTGTACCATATTTCACATAATACATTATGCACACATAGTTAGGTCATATTTCATGTGCAACAATCAAGATGATGTCCTGTAAACAATTAGATTAGTAAACAGTATTACAGTATGAATAAAAAAGTTTTAACAATCTAAAATTGGTAAGTCACTATAAGTATATGAACCAGTATCTTATATACATATATGTGAACATACAGTCCACATCTGTGTTCAAAGACATCTGTGTCAGAATGAGATACATTTAACAGCATGTGTGGTTTATAGATTCCTCTCTTCTCTTTGTTTGGCTCATAACTGAAGCACAAATGTCCATCATACCAAGTAAAATGATACCACAGAGAAACACATTGGCTATACAAAGCATAATTAATTATTGCTGACCAGGAAACTAGAAATGACAAAAAAAAAATGTCCTTCTGTGCTGAAATGTAAAATTCCATTAAATGTCATGCTTTAAAAATCCATGACACAGCTTAAACCCTTATGCTACAAATTCATTCATGCAAAAATAAAACCTTTACCATAGCTTCAGTCTTCCATTGTTCTGTAGTGATTATGTATTTCAGGAATTACTGGTATCACAATATGACTTAAATATAGTACTGTGTTTATAGTATATATTATGTTTAAGAATTTATTAATCTTGCTCATCACATCCATACATGACTCAATTAAGCGATGTATATTCCCAATAAATGCACATCTAAATCTTTTAGAACCAAGTTTTTAAAGGTTCATTTTGGTTAAATCAATGAGCGTGAATAGGAAGGATACTGTAATGTCTCCCAAATGATGCAAACATTACAGAACAACCAAAGATTGAATTACAGTTTTTCTCTCTAGCTTAAAACATACTTAAGTGTCACTTGGAGTTGGAGTTTCTAAGGCATCTTTTAAGGCATCGCTTTCCCTCCACCATTCCTTCTACTTAAACTTGATCTCAAAGCAAAAGCAGTTGATGGAGTCACACTCTGGTGGTTGACAGGTACAAG
>TU223780
AGACAGAAGTGACTGAGTCACAGCAGGTTTACTTTGTAAGTCATAGTATGCTGCTGTAATATGGCCACATACATAACTGTACCATATTTCACATAATACATTATGCACACATAGTTAGGTCATATTTCATGTGCAACAATCAAGATGATGTCCTGTAAACAATTAGATTAGTAAACAGTATTACAGTATGAATAAAAAAGTTTTAACAATCTAAAATTGGTAAGTCACTATAAGTATATGAACCAGTATCTTATATACATATATGTGAACATACAGTCCACATCTGTGTTCAAAGACATCTGTGTCAGAATGAGATACATTTAACAGCATGTGTGGTTTATAGATTCCTCTCTTCTCTTTGTTTGGCTCATAACTGAAGCACAAATGTCCATCATACCAAGTAAAATGATACCACAGAGAAACACATTGGCTATACAAAGCATAATTAATTATTGCTGACCAGGAAACTAGAAATGACAAAAAAAAAATGTCCTTCTGTGCTGAAATGTAAAATTCCATTAAATGTCATGCTTTAAAAATCCATGACACAGCTTAAACCCTTATGCTACAAATTCATTCATGCAAAAATAAAACCTTTACCATAGCTTCAGTCTTCCATTGTTCTGTAGTGATTATGTATTTCAGGAATTACTGGTATCACAATATGACTTAAATATAGTACTGTGTTTATAGTATATATTATGTTTAAGAATTTATTAATCTTGCTCATCACATCCATACATGACTCAATTAAGCGATGTATATTCCCAATAAATGCACATCTAAATCTTTTAGAACCAAGTTTTTAAAGGTTCATTTTGGTTAAATCAATGAGCGTGAATAGGAAGGATACTGTAATGTCTCCCAAATGATGCAAACATTACAGAACAACCAAAGATTGAATTACAGTTTTTCTCTCTAGCTTAAAACATACTTAAGTGTCACTTGGAGTTGGAGTTTCTAAGGCATCTTTTAAGGCATCGCTTTCCCTCCACCATTCCTTCTACTTAAACTTGATCTCAAAGCAAAAGCAGTTGATGGAGTCACACTCTGGTGGTTGACAGGTACAAGCACAATCCCACATCGCACACTGCAATAAGAAGACATGATGAACAAGAAAAACAAGCTGACAGTACGAGGATGTTCTATTTATATTTATAGGGCTGTTTGGAATTTGTGTACTGTTTGTTGTTCAGTTAAGTTATCTGATAATACCATCAATAATGTGAAAGATTAATTACAAAGACATTTGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223779 False 1140 lncRNA 0.32 1 4357157 4358296
TU223780 True 1256 lncRNA 0.33 1 4357226 4358481

Neighbor

gene id symbol gene type direction distance location
CI01000046_04319601_04326459 NA coding upstream 30625 4319601 ~ 4326532 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding upstream 39187 4308380 ~ 4317970 (+)
CI01000046_04274035_04275654 B9D1 coding upstream 81395 4273852 ~ 4275762 (+)
CI01000046_04098044_04120141 LLGL1 coding upstream 236805 4096231 ~ 4120352 (+)
CI01000046_04081845_04083512 NA coding upstream 273622 4081721 ~ 4083535 (+)
CI01000046_04478947_04510165 ARHGAP23A coding downstream 120466 4478947 ~ 4511125 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding downstream 174172 4532653 ~ 4542785 (+)
CI01000046_04545960_04557955 NMT1A, NMT1 coding downstream 187479 4545960 ~ 4558453 (+)
CI01000046_04563154_04565515 NA coding downstream 204606 4563087 ~ 4565727 (+)
CI01000046_04579543_04581492 NA coding downstream 220800 4579281 ~ 4581540 (+)
G197111 NA non-coding upstream 354 4356565 ~ 4356803 (+)
G196834 NA non-coding upstream 3923 4351486 ~ 4353234 (+)
G197109 NA non-coding upstream 6290 4350647 ~ 4350867 (+)
G196888 NA non-coding upstream 13282 4343598 ~ 4343875 (+)
G196892 NA non-coding upstream 21881 4334986 ~ 4335276 (+)
G197113 NA non-coding downstream 19 4358500 ~ 4358800 (+)
G197114 NA non-coding downstream 808 4359289 ~ 4359687 (+)
G197115 NA non-coding downstream 1741 4360222 ~ 4360500 (+)
G197119 NA non-coding downstream 10475 4368956 ~ 4369202 (+)
G197124 NA non-coding downstream 15801 4374282 ~ 4379788 (+)
G197055 NA other upstream 207377 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 411657 3943794 ~ 3945500 (+)
G196936 NA other upstream 1162886 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1899877 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 2398009 1865451 ~ 1881369 (+)
G197121 NA other downstream 12530 4371011 ~ 4371430 (+)
G196869 NA other downstream 57049 4415530 ~ 4421687 (+)
G197352 NA other downstream 915901 5259318 ~ 5276453 (+)
G197528 NA other downstream 1367640 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2461457 6808507 ~ 6821543 (+)

Expression


Co-expression Network