Item | Value |
---|---|
gene id | G197113 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000046 |
NCBI id | null |
chromosome length | 7063170 |
location | 4358500 ~ 4358800 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU223781 | True | 301 | lncRNA | 0.35 | 1 | 4358500 | 4358800 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000046_04319601_04326459 | NA | coding | upstream | 31968 | 4319601 ~ 4326532 (+) |
CI01000046_04308380_04317709 | GRAP, GRAPA | coding | upstream | 40530 | 4308380 ~ 4317970 (+) |
CI01000046_04274035_04275654 | B9D1 | coding | upstream | 82738 | 4273852 ~ 4275762 (+) |
CI01000046_04098044_04120141 | LLGL1 | coding | upstream | 238148 | 4096231 ~ 4120352 (+) |
CI01000046_04081845_04083512 | NA | coding | upstream | 274965 | 4081721 ~ 4083535 (+) |
CI01000046_04478947_04510165 | ARHGAP23A | coding | downstream | 120147 | 4478947 ~ 4511125 (+) |
CI01000046_04532653_04542785 | PLCD3, PLCD3A | coding | downstream | 173853 | 4532653 ~ 4542785 (+) |
CI01000046_04545960_04557955 | NMT1A, NMT1 | coding | downstream | 187160 | 4545960 ~ 4558453 (+) |
CI01000046_04563154_04565515 | NA | coding | downstream | 204287 | 4563087 ~ 4565727 (+) |
CI01000046_04579543_04581492 | NA | coding | downstream | 220481 | 4579281 ~ 4581540 (+) |
G197112 | NA | non-coding | upstream | 19 | 4357157 ~ 4358481 (+) |
G197111 | NA | non-coding | upstream | 1697 | 4356565 ~ 4356803 (+) |
G196834 | NA | non-coding | upstream | 5266 | 4351486 ~ 4353234 (+) |
G197109 | NA | non-coding | upstream | 7633 | 4350647 ~ 4350867 (+) |
G196888 | NA | non-coding | upstream | 14625 | 4343598 ~ 4343875 (+) |
G197114 | NA | non-coding | downstream | 489 | 4359289 ~ 4359687 (+) |
G197115 | NA | non-coding | downstream | 1422 | 4360222 ~ 4360500 (+) |
G197119 | NA | non-coding | downstream | 10156 | 4368956 ~ 4369202 (+) |
G197124 | NA | non-coding | downstream | 15482 | 4374282 ~ 4379788 (+) |
G197125 | NA | non-coding | downstream | 23478 | 4382278 ~ 4382492 (+) |
G197055 | NA | other | upstream | 208720 | 4149423 ~ 4149780 (+) |
CI01000046_03943890_03945302 | ATP5J2 | other | upstream | 413000 | 3943794 ~ 3945500 (+) |
G196936 | NA | other | upstream | 1164229 | 3186995 ~ 3194271 (+) |
CI01000046_02451052_02454565 | MAFK | other | upstream | 1901220 | 2442395 ~ 2457280 (+) |
CI01000046_01865451_01881353 | NA | other | upstream | 2399352 | 1865451 ~ 1881369 (+) |
G197121 | NA | other | downstream | 12211 | 4371011 ~ 4371430 (+) |
G196869 | NA | other | downstream | 56730 | 4415530 ~ 4421687 (+) |
G197352 | NA | other | downstream | 915582 | 5259318 ~ 5276453 (+) |
G197528 | NA | other | downstream | 1367321 | 5726121 ~ 5742684 (+) |
CI01000046_06808895_06820945 | GSPT1, ERF3B, GSPT1L | other | downstream | 2461138 | 6808507 ~ 6821543 (+) |