XLOC_009407


Basic Information

Item Value
gene id XLOC_009407
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35761681 ~ 35886373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019215
GGCGGGTATAAAGATAGTAAGGCCACATTTGATTGAGCAATTTTGGGTAACCAATCGAGTAAGATATGCATATTTTATCACGATAAGGGTCATTTTCGATGAATATTCAGGTATGATTCAGAGTCAGGTACTAAACAGGAGAGTCTGGAATtacagcatgtagactggactcTAGAGGCCTCGACATATGGAAAGTCTTTCAGAATGTGGAGAGGGAAAGAATGACATGAGTTGTACCTCATCAATGGAGTTCACACAGACATTCCTTCAGCGGGAGCTCAGAGACGACCAGCAGCAAACAAAAGATCCCCTTaccctgtctgtgtgtgtgtacgggGTCAATGGCGTGGGATGTGAGACAACCCAGAGAGGAAAGAGCACAGCACATATTTTTATCTAAACATCACTTAACTATGTGAACAGCATCTAGATACTCATCATCAGTGTATCGCTGCAAagGCATTTAAACAAAGTACCAACAGAAAGTTCAATCATTCAGCAGCATCAAAGTGGATTTGGGACAACACCTGCTTTATATTACGAATGCAGATGGAGAATATGTATCAGTCTTGCCAAGACGAGAGCCTTTCTTCAACATGCTACGTCCCGAAGAGAACAAGTTGCTGAGCTCATCCAAAGGACTGGTTGGCGTACGACATCCTCGACCTCCTGACCCTGAGCTTGAACCCGAAGCAGTGGAG
>TCONS_00019216
ACAGCAGCCAGTTTACACTgaAGTCAGGTACTAAACAGGAGAGTCTGGAATtacagcatgtagactggactcTAGAGGCCTCGACATATGGAAAGTCTTTCAGAATGTGGAGAGGGAAAGAATGACATGAGTTGTACCTCATCAATGGAGTTCACACAGACATTCCTTCAGCGGGAGCTCAGAGACGACCAGCAGCAAACAAAAGATCCCCTTaccctgtctgtgtgtgtgtacgggGTCAATGGCGTGGGATGTGAGACAACCCAGAGAGGAAAGAGCACAGCACATATTTTTATCTAAACATCACTTAACTATGTGAACAGCATCTAGATACTCATCATCAGTGTATCGCTGCAAagATGGCTGCGGGTCATTAAAGAACAGTTGTAATGCTGCTAATACCCGAGGACCTTCTGTCCTCACAGGACTTCCTCTCTGAGCTGTGTAATGTCAAAGGATGCCTCCGCGGTTGTGAACTATTGAGATTTACCGGGCACACAGGGTGCCGAGTCAGTTTAGGCCACGCGCACAATAAATcatctgtgtgaatgtgtttgtgctgCAGTGGAAATGCCAGCGCAGTCCTCGACGGTACAGCTCCATTTACTGGACCATAGTCAGTTAAGATTATGAGGAAACGGTATACGCTGTTTCAAATGCTTTTAGGAAAGAGATCGTTTTGTAACACCCTATCAACGTTGGACGCAAGTGGCAGAAAGCTATGCCTTAAAATCCAATTATCCACCATTTTCCAACGCCCCGTGGTGCTTTAAGCAAATTATAGGGGTAACCTGCATTAAACTCTCTATGGCCGGTGACTGCAAATACAtgcttaacccttgtgtactgtttaaatgtactacccttttgttatgttggtggctgtttttgccccattgacttccattataatgacattttttgattgcaaagccataacACCATATAATGCATTCTAAATTTTTGGTGGTTTCCCTGTTTTgaagaggtaaaatgtgtaatttttactatagatcatcagttggcactatTAGCCATTTAGATAGGCCTGTAcaaaaaagtttctggcttttatatgaatTTCTATGGAATAAAATAGAGGATTATAGTGTGTGCG
>TCONS_00019217
TCACGATAAGGGTCATTTTCGATGAATATTCAGGTATGATTCAGAGTCAGGTACTAAACAGGAGAGTCTGGAATtacagcatgtagactggactcTAGAGGCCTCGACATATGGAAAGTCTTTCAGAATGTGGAGAGGGAAAGAATGACATGAGTTGTACCTCATCAATGGAGTTCACACAGACATTCCTTCAGCGGGAGCTCAGAGACGACCAGCAGCAAACAAAAGATCCCCTTaccctgtctgtgtgtgtgtacgggGTCAATGGCGTGGGATGTGAGACAACCCAGATGGCTGCGGGTCATTAAAGAACAGTTGTAATGCTGCTAATACCCGAGGACCTTCTGTCCTCACAGGACTTCCTCTCTGAGCTGTGTAATGTCAAAGGATGCCTCCGCGGTTGTGAACTATTGAGATTTACCGGGCACACAGGGTGCCGAGTCAGTTTAGGCCACGCGCACAATAAATcatctgtgtgaatgtgtttgtgctgCAGTGGAAATGCCAGCGCAGTCCTCGACGGTACAGCTCCATTTACTGGACCATAGTCAGTTAAGATTATGAGGAAACGGTATACGCTGTTTCAAATGCTTTTAGGAAAGAGATCGTTTTGTAACACCCTATCAACGTTGGACGCAAGTGGCAGAAAGCTATGCCTTAAAATCCAATTATCCACCATTTTCCAACGCCCCGTGGTGCTTTAAGCAAATTATAGGGGTAACCTGCATTAAACTCTCTATGGCCGGTGACTGCAAATACAtgcttaacccttgtgtactgtttaaatgtactacccttttgttatgttggtggctgtttttgccccattgacttccattataatgacattttttgattgcaaagccataacACCATATAATGCATTCTAAATTTTTGGTGGTTTCCCTGTTTTgaagaggtaaaatgtgtaatttttactatagatcatcagttggcactatTAGCCATTTAGATAGGCCTGTAcaaaaaagtttctggcttttatatgaatTTCTATGGAATAAAATAGAGGATTATAGTGTGTGCG
>TCONS_00018838
ACATTACTACACGCAGCCAAAATTTGTTTATTCGGACGATAATGGCGTCAAGTTCTGTGTGAGGTTACTTCTGTGAATACAGCAGCCAGTTTACACTgaAGTCAGGTACTAAACAGGAGAGTCTGGAATtacagcatgtagactggactcTAGAGGCCTCGACATATGGAAAGTCTTTCAGAATGTGGAGAGGGAAAGAATGACATGAGTTGTACCTCATCAATGGAGTTCACACAGACATTCCTTCAGCGGGAGCTCAGAGACGACCAGCAGCAAACAAAAGATCCCCTTaccctgtctgtgtgtgtgtacgggGTCAATGGCGTGGGATGTGAGACAACCCAGAGAGGAAAGAGCACAGCACATATTTTTATCTAAACATCACTTAACTATGTGAACAGCATCTAGATACTCATCATCAGTGTATCGCTGCAAaggtattttaatttttttttttcttgcttttaatTCAAAGTTTCTGTTTCTGGGGCATTATTGCTGAACAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019215 False 701 lncRNA 0.44 6 35761681 35886373
TCONS_00019216 False 1117 lncRNA 0.43 4 35864583 35885893
TCONS_00019217 False 1048 lncRNA 0.43 3 35864583 35886198
TCONS_00018838 True 506 lncRNA 0.42 3 35874897 35885971

Neighbor

gene id symbol gene type direction distance location
XLOC_009406 NA coding downstream 85696 35614234 ~ 35675985 (-)
XLOC_009404 CR848683.2 coding downstream 100313 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 coding downstream 292881 35440740 ~ 35468800 (-)
XLOC_009403 mecom coding downstream 350821 35372907 ~ 35410860 (-)
XLOC_009402 mff coding downstream 509133 35226673 ~ 35252548 (-)
XLOC_009409 irs1 coding upstream 2176 35888549 ~ 35930070 (-)
XLOC_009410 col4a4 coding upstream 65515 35951888 ~ 36055401 (-)
XLOC_009411 ostn coding upstream 342462 36228835 ~ 36249087 (-)
XLOC_009412 si:dkey-23k10.2 coding upstream 442995 36329368 ~ 36347895 (-)
XLOC_009413 si:dkey-23k10.5 coding upstream 462636 36349009 ~ 36357889 (-)
XLOC_009389 NA non-coding downstream 1154275 34602522 ~ 34607406 (-)
XLOC_009383 FP017158.1 non-coding downstream 1482146 34279421 ~ 34279535 (-)
XLOC_009415 NA non-coding upstream 535218 36421591 ~ 36437846 (-)
XLOC_009416 NA non-coding upstream 613833 36500206 ~ 36503189 (-)
XLOC_009419 NA non-coding upstream 898106 36784479 ~ 36784773 (-)
XLOC_009420 AL953844.1 non-coding upstream 987878 36874251 ~ 36874366 (-)
XLOC_009422 CR848749.2 non-coding upstream 1372981 37259354 ~ 37264265 (-)

Expression


Co-expression Network