G197124


Basic Information

Item Value
gene id G197124
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4374282 ~ 4379788 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU223792
TTAAATACACACAATATTACCGTGGTATTACTTTATTGTGATTAATACAGTATCTCTTCAGTTAAAAACAAAAATGCATACTGTTCACTCTAGTGGACATCTGAAAATCTCTTTGAAAAACTGGTGTAAATAAAGAAAGTCCAAATCTTGTTTTTCTTGCCCTAAGAGCAATAAAAACACAAAATTCTGACTGAGGTTGTCATAATTCATGCAGGAAACAGTTAATCATTTATTAAAATTCAAAAACTCAATAGCTATATTAACTAATGCAAGAGAAAATACCCTATAACACCACCCAAAATGTACTGCATGTTAGTTAATTCGGTGATAAAGTGACAGATAACAGCTTTAATAAATAGCCTGGAGGACTGCTGGGAGAGAGAGCAGCAGGACGCAGGTGAGCGAGAGGGGTGAGAATGACTCAACCCCATCCAGAATAGATGGGTAGTTATAGATGGTGTTAGACAGGAAGGAGCTGAAGGGAGAGGTCCTGATGAAGACTGTGCTGTTGGAGGATTGTGGGAGGATGCCAAAGCCAGGGGGAATGGACCAAATACCAGTCTGAATCCACATGTCGCTTATTTTGCACAGCAGGGGACTGCCGTTATCTTGCTGCTGAAAAGGCAGTGGCTCTGTGCAGATGTTGATCGGTGTGGTGTCTGAAGGATCACAGTTTACAATGGTGGTCTGGACTTCCAGAAAAGATTGTTCCGATTCAGCCGCTCCTGAATTCCAACCAACTACTGAACATTCAGTACCAGGGACAAAGCTTAAATCATACAGGTCAACCGGAACATTGGCAATGTAAGTAAATGGAGAAGACAGCTCCACAAGTGCTACACCATTTCCGAAAATATCATCGAATAAGACATTTGCCACTTCAACTGACACTGGGCTGCTGGAACAGTCCCAATGGGCAATATTGAGGGTCACTGCCCATCCATCCATACCCATGGATCTGGAAAAGCAGCTAGCAGAGGTCATGATGAATCGGTCAGAAACCAAAGTTCCTACACATGTATGATAACCATAATATTTTAGACTAGCCATCCATGGCCATAAACCTGCAGAGCCTCCACACACTGTCGGTAGAGTAGGGCAGTTCACATTCTCATCCTGAACAAGAGTAGTGGAGTTAAAAGTGACGAAACCAGTACTGTTTGATCCAATTACCCCACTGATCCACTGCTGGTACTGAGAAACTCTGGCATACACACCAGGATAATCAGGCAGAGCACAACCTTGACCGAAACTCACAACGCCAGCCTGGATCCATGTAGAGCCCTGTTTGATGACCATTGGACCTCCAGAGTCACCCTGGCAGGAATCTTTTCCACCTTCCAAAGGTCCAGCACACATCATGTTTTCTGTTATTGATCCACTATAAAGACAGTTACATTTACTATTTCCAACCAGAGGCACAACCACCTCCTGTAGGATTTGAGGTGAAGGAAGGGGTTCACCTGAATTCACATCTCCCCAACCTGTGACCCACATCATGTCACTGTTGAATGTGCTTCCCTCTGCTGCCAGACAGACTGGTTGGATGTAATTAGTGAAGGTCACAGGTTGGGAAAGACGTAACAGAGCCATGTCATTGTTATGAGATTGTCCGTCGCCATAGCCTGGATGAACTATGAGTTGAGAGACTCCTCTGGACACCTCGTTTGGATTGGATAGTTCTTGAGACTGTCGACCCAGGTACACAGTAAGGCTTGCGGCATCAGTCCCTGGAAAGCAGTGAGCTGCTGACAGAACCCATTGATTGTTGATGAGGGATCCGCCACAGAAATGACTTCCATCCGCATGAAGGCTGACCTGCCATGGCCAAGCGCCAGCAGACGCATTAACTCCCCCCACGATCTTTGTGTTGAGAGGGGCTCTGCCACACGCATGCTGGCAGTCACACCCTTTGGTTAGGAGAGTGACCACAAACACCAAACTCAGTTTCCAGAGCATCTTCATATTTCTGATTTCAGTGATGACTCTGGACTTATATATCTTTTATGGCATGACGCCTACACACCTCGTTTTTGAAGTCTGGATTGCTTTTGGCACACCTACACAATGAACTCAACAATTCTTATACAGTGGAGAAAATGACAATATAAATGAAAAATATTCAGGCAAAGATTCTTTCACATTAAATGGAAAAAAACTTGACTCTCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU223792 True 2171 lncRNA 0.44 10 4374282 4379788

Neighbor

gene id symbol gene type direction distance location
CI01000046_04319601_04326459 NA coding upstream 47750 4319601 ~ 4326532 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding upstream 56312 4308380 ~ 4317970 (+)
CI01000046_04274035_04275654 B9D1 coding upstream 98520 4273852 ~ 4275762 (+)
CI01000046_04098044_04120141 LLGL1 coding upstream 253930 4096231 ~ 4120352 (+)
CI01000046_04081845_04083512 NA coding upstream 290747 4081721 ~ 4083535 (+)
CI01000046_04478947_04510165 ARHGAP23A coding downstream 99159 4478947 ~ 4511125 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding downstream 152865 4532653 ~ 4542785 (+)
CI01000046_04545960_04557955 NMT1A, NMT1 coding downstream 166172 4545960 ~ 4558453 (+)
CI01000046_04563154_04565515 NA coding downstream 183299 4563087 ~ 4565727 (+)
CI01000046_04579543_04581492 NA coding downstream 199493 4579281 ~ 4581540 (+)
G197119 NA non-coding upstream 5080 4368956 ~ 4369202 (+)
G197115 NA non-coding upstream 13782 4360222 ~ 4360500 (+)
G197114 NA non-coding upstream 14595 4359289 ~ 4359687 (+)
G197113 NA non-coding upstream 15482 4358500 ~ 4358800 (+)
G197112 NA non-coding upstream 15801 4357157 ~ 4358481 (+)
G197125 NA non-coding downstream 2490 4382278 ~ 4382492 (+)
G197130 NA non-coding downstream 17730 4397518 ~ 4397830 (+)
G197135 NA non-coding downstream 33074 4412862 ~ 4413349 (+)
G197136 NA non-coding downstream 41948 4421736 ~ 4421959 (+)
G197140 NA non-coding downstream 56090 4435878 ~ 4436252 (+)
G197121 NA other upstream 2852 4371011 ~ 4371430 (+)
G197055 NA other upstream 224502 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 428782 3943794 ~ 3945500 (+)
G196936 NA other upstream 1180011 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1917002 2442395 ~ 2457280 (+)
G196869 NA other downstream 35742 4415530 ~ 4421687 (+)
G197352 NA other downstream 894594 5259318 ~ 5276453 (+)
G197528 NA other downstream 1346333 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2440150 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025600 zgc:165423 coding NC_007114.7 CM002887.2 39540014 ~ 39550089 (+)