G196869


Basic Information

Item Value
gene id G196869
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4415530 ~ 4421687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU223530
ATGTCCCAAGTGTGGTACAGCTTGAGGTACTTGTTAGTTAAGCTACGGTTTAGTCAGTATCAGAACTGAACCACTCAAATCGAGACATTTCAATAAAGTGCCATGCTGAATAACAACTACAGTACATTTTGCTTCTGCTACAATGCAAATATATGTAAACCAACAGGTTACACAAAATATTAGCTATGCACACTTGTTTTAAGGTACTGCCAGTGAAAATCATACAACGTACAGTGTAAGAACAACAGAAAACAGCTTCATGGTGTGAGATCTTAAGAGTTCACATTTGTATAGTAAAAATGAATTATCTGCTCCACAAAAGCTTTTAATGCTGGATATGATTATGTGTCTGAATATTTACAGTCATATTCACAGTGAATGAATGAAAAGTGGCCCCTCCTCCTCAAAAGACTCAGTTGATGCCTTAAAGAAAGATTTGGAAAGCTGCAAGTGAGAGGAACAGGACAGAAATGGTAAAAGAGAAGGAAGAAGATACTTGTGACCCATTAGAGGCACCTTGGGATGAGTTGCTGTTGCTTATAGGTGCACTTGTGGGGTTTGTGGCTTTTGGAGGGAAGGAACCCACCACAGATGTCAGGAATGGTGCAAAGCTGGAGGTTTTAGTAAAGACCTGGATATCTGTAGCACGAGCAAAGCGGGATGATGCAGTGCTGTTGCTGGAGCTTGTGTTAGAGCTGCTGTTTGTGATGCTAGTCTGTATAGTCAAAACAGCAGCATGGATCCATGACAGACCCACCTTACACATCAGCGGACCCCCTTGATCACCCTCCTGTAAGTTCAAAGAACTTGTGCAAATACTGTTGCTTGAGTTTCCACAATCCACAATAGAGGTCTGGAATTCCTGAAGAGTTTGATTCACTCCTCCTGCTCCTGAGCCCCATCCTGCCACCCAGCATTGAGTATTAGTGCTGAAGGTCTCTCCCAAGTCCACGCATATAGGTTGAATGAAATTTGTGAGGTTTGGTGCAATGGCCAGCTGCAAGACTGCAACGTTGTTGCCTGTAACATTGCTGATTGTAAAATTCGCCACTTTTATAGAGACCTCATTGGGGTTGGAACCGTTCTGATTCAGACGGCCCAGGATCACGGTCCAATCTGAGGCATTGCGGGATCTGGTAAAACAGCTGGCAGAGCTCATGACAAAACGTTCAGCAATCAGCGTTCCTCCACAAACATGACTGCCGTTAAACTGCAGACTGGCCATCCATGGCCATACGCCTGCAGATACAAGGGCGCTGTTTCCTCCTAAACGAGTGTTCAGACTGGCACGTCCACACACTACAGGTGGGACAGTTGGTATAGTTGTAGGGGCAGTGGTTGTCGTAATGGCAGGCACACCATTACAGCTGATGCTCAGGTCACCATCAGTACCACTGGAGCTGAACTTAACGAAGCCTGGCTGGTTGGTGGTGATCTGCTGATTGATCCAGTTCTGGTAATTAGACACTCTGGCATACACACCAGGAAGGTTAGCTTGAGCACAACCTTCGCCAAAGCTCACAACTCCAGACTGGATCCAGACCGAGCCCTGTTTGCTGACCATAGGACCACCAGAGTCACCCTGACAGGAGTCTTTGCCCCCTTCCAAAAGTCCAGCACATATCATGTTGTCTGTGATTGCTGAGACACCATAAAGGCACTTACATTGCCTGTTTCCAACAATAGGCACTTGCACTTCCTGTAGAGGTTTCGATGAAGGCAGGGAAATGCCTGCATTAGTGTTTCCCCATCCAGTGACCCAGCTCACGGTGCGGTTGAAGAACGTACTGCTTGAGGAAGCCAGACAGACCGGACTGATATAGTTAGTAAAACTCACTGTCGAAGCCAGTTGCAGAAGAGTGATGTCATTGTCGTGAGATGAGCTAATGTAGTTTGGGTGTTTTACGATTTTAGCGACACCCCTGGACACTTCATTTTCATTTGGTCCTTGCTGTGTTTGTCGGCCCAGGTACACAGTTAGGCCAGAGGTTGAAGTATCGTCAAAGCAGTGCGCTGCAGTCAGGACCCATTGATTGTTGATGAGTGATCCACCACAAAAATGGCGACCATTCCTATGAAGGCTGACCTGCCATGGCCAAGCGCCAGCCGGTGCATCCTGTCCCCCCACTATCCTTGTGTTGAGAGGTGCTTTGCCACATACATCCAGTTGTGCGTCACACCCTCTCATTAGAAGAGCGACGGTAAATGCTACACTAAGTGTGTGGATCATCTTCATCTCTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223530 True 2243 TUCP 0.47 10 4415530 4421687

Neighbor

gene id symbol gene type direction distance location
CI01000046_04319601_04326459 NA coding upstream 88998 4319601 ~ 4326532 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding upstream 97560 4308380 ~ 4317970 (+)
CI01000046_04274035_04275654 B9D1 coding upstream 139768 4273852 ~ 4275762 (+)
CI01000046_04098044_04120141 LLGL1 coding upstream 295178 4096231 ~ 4120352 (+)
CI01000046_04081845_04083512 NA coding upstream 331995 4081721 ~ 4083535 (+)
CI01000046_04478947_04510165 ARHGAP23A coding downstream 57260 4478947 ~ 4511125 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding downstream 110966 4532653 ~ 4542785 (+)
CI01000046_04545960_04557955 NMT1A, NMT1 coding downstream 124273 4545960 ~ 4558453 (+)
CI01000046_04563154_04565515 NA coding downstream 141400 4563087 ~ 4565727 (+)
CI01000046_04579543_04581492 NA coding downstream 157594 4579281 ~ 4581540 (+)
G197135 NA non-coding upstream 2181 4412862 ~ 4413349 (+)
G197130 NA non-coding upstream 17700 4397518 ~ 4397830 (+)
G197125 NA non-coding upstream 33038 4382278 ~ 4382492 (+)
G197124 NA non-coding upstream 35742 4374282 ~ 4379788 (+)
G197119 NA non-coding upstream 46328 4368956 ~ 4369202 (+)
G197136 NA non-coding downstream 49 4421736 ~ 4421959 (+)
G197140 NA non-coding downstream 14191 4435878 ~ 4436252 (+)
G196889 NA non-coding downstream 15550 4437237 ~ 4443882 (+)
G197153 NA non-coding downstream 219494 4641181 ~ 4643913 (+)
G197158 NA non-coding downstream 227263 4648950 ~ 4708769 (+)
G197121 NA other upstream 44100 4371011 ~ 4371430 (+)
G197055 NA other upstream 265750 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 470030 3943794 ~ 3945500 (+)
G196936 NA other upstream 1221259 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1958250 2442395 ~ 2457280 (+)
G197352 NA other downstream 852695 5259318 ~ 5276453 (+)
G197528 NA other downstream 1304434 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2398251 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location