XLOC_009410 (col4a4)


Basic Information

Item Value
gene id XLOC_009410
gene name col4a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35951888 ~ 36055401 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018500
TACCCCTTTACTTTGCGTCGGTGTCAGAAGTCCCAGCAGCATCATTCCGACAAGTGTCACGCGCAATAATACCCAATGATCCATTGTTTTTCACTGGGAAGAGAACCCGTGCGCAATTGCAGTCCAAAACTATCTCGGAATCACGCGTAATTCAGGCGTCCTGAATGGAAGACCAATCTCTCCAAATCCACCTCCAATAGCACCTGCAGTGCTGCGAGCATGTCAGATATAACACTTAAACTTATGCTCAAGAAACGGACGCTTTTTGGACGGTCAGTGAATCCATAAGAGTATGAAATCAGCGGGCTTTCAACAGCGTAGTGAGTTGGAAGTCCCACTGTTTGTAGTTGGGATAGGTAAAGCCTCATCTCTCATCTTGACGTCATGCAAACACGGAGCCGCAGCGGGCACCAGTTTTCAGTTGTCTCTTCCGTTGCACTGGATACTGTGTCATGTGTTCAGGCTTTAAGTTCGGCGTCCTGCTAAAGTTCTCGTTAATGTAAAGCCGCAGTAGCGCAGGAAACTACGAGAGCAGGTGGGAGAGTTGTCCATCGGGACGTCCAGAGTCGTAGCTGACCACACCGTTCATTGACAGTGGAGAAATATCAACAGGTATCACATGCCCTGAGTGGCGGCTGAGATGACACGCCCCCACCGAATCGCCTCGACCAACCTCTTTTTCTGCAGGAGGCTTTTATTGGCACTTTTGATGATACAAACAACTTTGGGGgGGGACAAGACAGAAGAGTGTGGAGGTCGAGACTGCAGCGTCTGCCAGTGTTTCCCCCCGAAAGGAGAGCAGGGGAATCCTGGTATGTTGGGTCGACAGGGCCCCCAGGGGCCCCAAGGTTCTCCTGGCCCCCCTGGACTTCGTGGTGATAAGGGTGAACGAGGAACAATAGGGTTCCCTGGGGTGTCCGGTCCAAAGGGAGAACTGGGTGCTCGAGGAGTTGAAGGCCATGCTGGATTAGATGGAGTGCCTGGCCATCCTGGGCCTGGTGGTCTTCCTGGGCTTCCCGGGAAGGATGGCTGTAATGGAACCAAAGGGGAATGTGGGCTGAATGGTGAGGTGGGACGCCCCGGCCTTCCAGGACCTGTGGGACTGCCTGGGTTCAAAGGGGCCAAAGGAGAACCGTTTTATAGGACGATTTATCTACCTGGAAAACCTGGTGCCGACGGACCACCAGGAATGGTTGGACCACAAGGACTTCAAGGCATTGCTGGCCCAAAAGGTCCTCCAGGATGGGTGGGATCTGACGGCCCTAAAGGTAAACCAGGTCTTAAAGGTCCAAGAGGGCCACCGGGAGACCCGGGTAGATCACTGGCAGGACCAAAAGGAGATGAGGGTGATCAGGGTATTCAGGGTGATCCAGGTCCATTTGAATATGTGGAGCCCAACCCAGAAGACTACATAAAAGGAGAAAAGGGGGAACAGGGACCAAGAGGGTATATTGGAATACCTGGTCAGGAAGGTCCTGAAGGGCCTTCAGCAGAAAAAGGAGAGAAAGGAGTGATTGGGCTGCCTGGAGTCAGAGGTCCACCTGGATATCCAGGCCAAACAGGGCGTCAAGGACCTAAGGCTGAACGTGGTGTGAATGGTCTCCCTGGTCTCTATGGCACCAAAGGGCTGATGGGCATCCCGGGTGACCCTGGGCCTAAAGGAAAACCGGTGGAATCTCAAAAATATGTGATAGGACTACCTGGAGATCCTGGACCACCGGGAAATCCTGGAGCACCTGGTGACAGAGGGTTGATGGGTATACCTGGACCTTCTGGTGATCCAGGACTATCTTTACCAGGTGCAATGGGTGACACTGGTTTAATGGGTCTCAGTGGACTCAAAGGACAAAAAGGTGGCGCTGGAAGCATATATGGGTCACTCTTGAGCTACGGGGAACCTGGAAAACGGGGTTTTCCTGGACCTAAAGGACAAAAAGGAAATCCTGGCACTCCTGGTTATTACTGCCTTCCTGGTGAACGTGGAGATCTTGGACGAAAAGGAGAAAGAGGGATTGTCGGATATAAAGGTGTCCAGGGGAGAAAAGGTCCTGATGGAGGATGTGCATGTGATCCTCCTGGTGATCTTCCTGGGGATCCAGGCCCTCCAGGCCCTCCGGGTGAACCTGGTGATCCCGGGCAGAAAGGTTTCAGAGGCCCCCTTGGTGAAATTGGACTCAGTGGAGACAATGGTGTGAATGGGATAACTGGTTCCAGAGGCTTAACAGGTCCCAGAGGAGTGAAAGGAAAGAAAGGAGAGGTTATGACGTTAAGCATAAAAGGGGAGAAAGGTGATCTGGGTCCTTCTGGACAGCATGGAAAACAAGGGTATACTGGGAAATCGGGGGTTGATGGGATAGATGGCGACCCTGGAGATCCTGGACCTTTGGGAGATGATCTCTTTGGTCCACCAGGTGACAGAGGGTGTCAGGGCGCTATTGGTGTGAAAGGTGTCAGGGGTCAGACTGGACCTCCTGGTGGATGTATTATGGGGTCAATCGGGCGACGGGGGCAACAAGGAGACCCCGGACCTCAAGGCCTGGCGGGATTCCCTGGCCCTAAAGGGCTTCAAGGTGAAACTCTGCCCTGTGGACCTGGCATACCTGGACCCCGTGGTTGCAAAGGGATGCCTGGTGGTATAGGTGACAAAGGTAAGCTTGGAAATCCAGGCTGCATAGGACAAAACGGAACAAGGGGACCCAAGGGAGAAATAGGAGAACCTGGGGATTGTGGAATCACTGGACAAAGAGGTCCAGATGGCTATTTAGGAGATCCAGGTGAACCCGGGCCCTGCGGCATCAGTATTAATGGCTCACCTGGAATACCTGGCAGTCGTGGACCCGAGGGTCTGAAAGGCTCTTGTGGAGACCGTATGTTTGGGGCTCCAGGGCCGCTGGGGCCCTCTGGGGTTCAGGGATGTCAGGGCCCTAAAGGTGTCCCAGGACCTCCAGGACCTATTGGATTGCAAGgtaTGTCTGGTGTTCCAGGGTATCCTGGTAGAAAAGGGGAAAGGGGGAAGGATGGTGCACCAGGACCACCTGGACGCCCAGGTAAGAGTCCAGAGCAGTGCGATAAAGGAGATGAGGGTCTGCCTGGCAAGAAAGGAGAACAAGGCTTAATTGGACATAGAGGCTACCCTGGAGAGAAGGGGTCACTTGGGGAGCTGGGATGTCCTGGCATTGGAGCCAAAGGAGCCCGGGGTAAACCTGGTACTCCTGGACCCCAAGGATGCATAGGCCTTCAGGGACCCGCAGGAGTCAACGGTGACGGTGGAAATCCTGGATATCCTGGACCAAAGGGTTTGCCTGGACCATGTGGACAAAACGGCTGTCCTGGAAACATCGGGCAGACGGGCTGTTTAGGGCCTCCTGGACCGAAAGGCTTAAAGGGCCTCAATGGATGTTCAGGCTTCCCTGGATTTAACGGAACCAAGGGCCAGAAAGGATGCGTTGGGCCTCCAGGTTTTCCAGGAGACTTGTTTTATCACCCTGTGAAAGGAGAAATAGGACCACCTGGACCCAATGGGGAGAATGGTTTCTGTGGAGAAAGAGGTGATAAAGGTGATCCAGGTCCACCGGGAACACCGGGGTATCCGGGTCTGAATGGACCTCCAGGCTTTGAAAGGGGCTGTCGTGGACCGCCAGGCGCTCGTGGGGTGCCTGGTGAGCCTGGAGTACGTGGACCACATGGGCCAAAGGGAATTGTGGGATTCCCAGGGGAAAATGGTGATAATGGCGATCCTGGATTGAGCGGCATGCCAGGAACTCCTGGTTATCGTGGATATGATGGTCCTAAAGGCGACAGTGGTGAATCTATTTGTACGCCAGGGCGAACAGGTGAGAGAGGGCCATGTGGAGACAATGGTGTGCCAGGTCCCTGTGGGGAGAGAGGAGACAATGGTGACATTGGACCAGCAGGTCCAGATGGAAACTGTGGCCCTCCTGGGCCACCCGGGATCAATGGTCATATTGGACCTCCAGGAGTGGTTGGGCCCCCAGGTACATGTGGTAGACATGGTCTAGAAGGACCTCCGGGGCCTCCAGGTCCGCCGGGTAGTAATGGCAATGAAGGATGCACTGGCCTTCGAGGACCTCCGGGGCCCCCAGGGCTTCATGGGCTGGACGGTCTAAAGGGTGTCAAGGGTGAGATTGGATCTCGAGGGCTGGGTTCCACAGGTGAAAGAGGTGATCAAGGGCCAGAGGGAGACAAAGGTGATCAAGGGGACCCGGGGTCACGAGGCCCTTCACAAACAGGTGTTCGAGGTCCGAAAGGACCGCAGGGACTGCAAGgaGATCCTGGTCCAATGGGTCCTCCAGGCATTGTGGGTGAAGAATGTAGGGTTCCAATGCCTGGACTTGGTGGAGAACGGGGTTTCCCTGGGCTGGATGGACCTCCAGggCCCATGGGGTTAATGGGGGATCCAGGCAATGCTTTTACAGTGTGTGGTGAATGTGGTGATCCGGGTGGTCCTGGGTCACTTGGGTTTAAAGGAGAGAAAGGATGCCATGGGTCTGGTGGCACCCCGGGGTGTCAAGGCCCACAAGGCccaaaaggtgAAAAGGGGCTGTGTGGACTTATGGGAATCCCGGGACTCCCTGGCCCTATGGGTGACTGTGGGCCTCTGGGTCCCAGTGGTGCAAAAGGAGATAAAGGGGACACAGGTCCAAAAGGAGACCCTGGCAATGTCATAAAACCCACTACTTGTCCTCCTCCTCAGGGCCCTCCTGGTGATCCAGGTCCACCGGGACAGATCGGTGAAGTGGGTAAAAATGGAGATAATGGCAGTGGGGGTCCAAAAGGTGAGAAGGGGGAAAGAGGAATCATTGGGATTTTTGGACAAACTGGGCCCCCAGGAGAAGATGGACCTCTTGGAAACCCTGGAGATCAAGGTGAAAGAGGACCAGCTGGCTTTAAGGGACCTCCGGGACCAGATGGTGATCGAGGTCCCCCTGGAAGAAATGAGACACTTTCTACAGGCTTTCTTCTAGTGATGCACAGCCAGTCCCGCTATGTGCCGACTTGTCCTGCAGGCCTTACACAGTTGTGGAACGGCTACAGTCTGCTTTACCTGGAGGGtcaggagagagcacacacacaagATCTGGGCCAGGCAGGTTCGTGTTTGCCAGTGTTCAGCACGATGCCGTTCTCCTGTTGTAATATGGACACTTGTGATTACGCCAGCCGCAATGACAAATCCTATTGGCTGTCTACAAATGCCCCCATTCCTAATAAGCCTCTGAAAGGGCAGGATATCGAGGAACACATCAGCAGGTGTGTGGTGTGTGAAGCTCCAACACCAACCATTGCAATACACAGTCAAGACCGTCTTGACCCAGTGTGTCCACCCAAATGGAGGAGCCTCTGGACCGGATTTTCATTCATGATGTATACGGGGTCAGGGGATGAAGGCGGTGGACAGTCTCTGACATCAACAGGAAGCTGTTTGCAAGACTTCCGCAGTCAGCCATTTGTGGAGTGCCAAGGTCCCCGTGGCACATGCAGTTATTTCGCCAGCATCTACAGTTTCTGGATGACTATAGACATGGAGCACAATGACTCCAGTCCTCACGGTCCTGTGATCACAGAGGAAAGGCAGCAGCGCGACAGCACCAGCAGATGCAGCATCTGCATGATGAATGACCCCAACCAATGATACAAGCCAATGGTATTTTCTAAACTGCACTGAGAATGCACATCAACACATCACTTGTTGTTTGAGTGATTGAGATGCTTTTTGGTCACTTTGTTTTTGGAGAGGACAAGAATGAACATTATTTGTGACCATTGAACTACACAGCTGTGAACTTTTTACTTCATGGGATTTGTTCCAACATAACCTCTTTACACAGCACGCATCTTTGCTTCTTGTCTTTGATTTCATTTTGGTGCTAGAAAATCCAATATCGTTTGCACATATTCCTCTTTAAAAGATTTCCATTTTCTCCCTGGTTGTTATGTGTTTGTGCACATCAAAGCATCTCATTGAAGATGTGGAATATTGTAATGCTAGTTTTTTGTCTACGGTGCCATCTTTAACCAAAACTGAACCATGTCGGTATACTTCTTTAGAGAGTAACATTCATGTTTCAGAAGCGAAACTCCATTCATTTTCTCCATATGGAAAGTCAGATCTTTTGAGACTTCGGTATTGTACATACACTTTCCTCTTtgcattaaagggatatttcacctaCAATAGTAATttaactcatcatttactctcccttgtgtggtttttgaacacaaaaaaagatattttgaagaaattggTTGCTGACTGGCTTTcacaacattaaaacaatttaCTATGGAGGTAGGGTTCGGTGATGTCGACCAAATTGGCATcctacgatgtctaatgtgaaacatcgcaatgaACGATGGCAACATCGTTATAGgcagcggtgaattaattattaatgactaattacttcataacaaattaattatttgtagtctaccgTTTAAATATCTGACACGCATGGTCTTtgtttacccataaccaaatcataaataaattaagttacacacaaattaccacactACCACACTTTTACCGCGAAActatgaataggcagagtgatctgtgtcattataatggcatcgacaaacttggttggtaaaaacagtatctgaggttttcactaaaattcctaagtacaagcgtgaaagcgaaagattgaagaagtgtactgatgctgtgacacgttaccggatagattcaaaagacagaagagtcaaTAGATAgtgacaagattaattaaatattatgtttaacaatTATAATGAGGCGCAATCCAGTGAAAGATCCTTGCTAAACTGTCAGActtgcactgctctctggggttttgtgctcaaagcacccgctgactgctggagctcagacgagtgcatgactctgtgtgtgtgtgtttgtgtgtgtgtgtggtcatgtgatgtgggTTTTCAGCGGTATCCGCTTGTTAaatgtgacgtcacgcaaagcggTTTCCGGTTCCAAACGCTCTTTtttcaactgtatggggagactcatgaaatggtatttataaacgtttacaaagcgatttaatactttcgaaaatcacgatcgcagatTGTTgcgtacactatgactttatataaaattaactttaatgtgtgatatgaattgaaagatcataaacaaataatttctcaactcaaatgagtggcagcTTGGACACGGAAaaagtattacatacgtcaccaacacgtcatcacttaacaagcggatagtgtaGAGGTAGGGCTTtttagaaatgctagatgaaacgccagtgtggacgtggatcattttcattctaaaatggcattttaaaattaCGGCGTTTGAGTGTAAACGGcacctgagtgtgtatttttcatgagcGGGTTTGTGACAGGGGCGGGACGGAGCATcgcgatgccagctcagcatcgtgatgtctatcggccatcagcgatggatgatggcatcgtctatcgacccaaccctattgaacctattcttcaatgcggaagtgcgctcttTTTTGCgactgttttagaacttccgcttcagtcgcctataggagaaatgactaggaataaaaaATGGTAGAAAATGATCacactacttgctcaacaaacaagtgtgttcatgactatacagacaaagcagaataatataataagaaaatttcagtttgcaacatcaagcagaagAACGAGCTGTTTTTATGTCTAAAAAATAATGGAAGTTGATTATACCGGAAGTCTCGAGCGAAAAAGATTAAAATGGCTGCTCCCGCTCGTACGTGAAGAATAAGCtgaatatggaagtcaatgtgtcttagcaaccagcattcttcaaaatatcttcctttgtgttcaacagaagatagaaactcaaactggttttgaacaagtgagggGTAGGTAAACTATGATACAATTACTTTTTTAGGTGAACAACCCCTTTAACTTATTTTGAGACTTATTATTTAATGTAAGAATTAATGCagaaaactacatttcccatgatGCTTTAAAGAGGCATCTAATTAATCAAAGAGTCATATGCATTCTTGCAATGATCTTAAAATATGTTATGTAGATACTaccaacaatttttatttttttttttgcaatatttcataGGATTGTAATTCTTTCCCATAAagcatttcttattttttttccttttgtctgATTTTAACAGACAAATTAAAGTTTGTAATGTTGTGATTCTCCTCATTGGTTGGTTTTCACATTCACATAGATGaaagattttatgaagaaaagtaATGGGAAAAATACATCTGGGAGTAAAGTTTTCTTCATTTCAAGTGCATAGATTTTAATTCTTTAGTTGAAATCAAGTATTTTAAGCAGTaacttcacctaaaaatgaacattctgtcatcatttactcatttcttTCTACAcaatactgaagaatgttggaggaaaacagccattgacttctataggatTTTTGTTACTATTTTTAATAGCTGTTTCCCCCCAATATTCCCTTTAGAATAGTTcatttggtgttcaacagaggagagtaattcataaaagtttagaaccagcGTGCGAGTAAATTTTtgttttggggtaaactatccctttaaggtacGGCCATTTTCCGCGTAAAATGCTGTCACTGTGTTAAGAATCCACAAAATTGGGAAATTAGCATGAAGGTAAAAAGACTTTCCATAAATGTTACACAAAAgctttaaatatgattttaaattaTGACGACGCCATTTTGACCAACATTTTTGaacagacatactttgaaaaagcTGTCGTTAGCATTTTGCTAACATGACAACACCTTTAGCAGGGTATGTTTTTAACTTAAGTTAATTTAGAAACGGCAGGAAACCGAGACATTAGCTGTTAGTTTGTAAAGTGTTCAAGAAGATTTTAAGTCGTATGCCATGCGTTTGTGCATTAGCTTAGCTAATCTAAAGGTTGAGCTACATGAATTAGCAAAATTTATTAGACAGTTTAGGAAATCTCCAAAGATTATAATGAACCtacaaatatttataattctTAAAGCATTGTCTCCAAAGAAATTTGAGATGAGGCTAGCATTATCAGTCCAGTAGTTGTGAATGTTTGGAGGATAGTCAGTAGTTAAACAACCTATGTATTTAAAACACTTCAACGGTACTGTTTCATATAGTTAAACTAAACAAATAGTCCTTTGATTTCTGTGTATTTTGCTGTTTTGTTGCAATTGAATTGACTGCAAAGGTCATCATTATCGTAGACTTGAAAATTGTACCCTTTTTAACTTTGTGATATTTGCCTTTTCTGTCTAAACTAACTCAAGCCATTAAATTGAAACTAACACCCTCAGTATTGTACTGTCCACATAAGGGGTCCTAAGcgatatttttttacattttatttgttgttgttctgaGCATGATAACTCCTCTGTATGTATATGATTGCAACTTTGCTTTCTATCTTTATGTCAAGAGTATTTATTTAGATAGATATTTTGGTGCTAGTGAATggacaaaaaaaatctgtaccctttttaaaaatcatgcttTTTGTCTGGTTTTGATGTCGCTGTCATATTGCTAATAGAAATACTATTGGCTGTGCTTGGGGACATGTTCATATCTTAAGTACTGTACTGCTGCATGGACGTACACATTAAGACGACGCAAATTGTTAAAACCTTTTCCAAGGCGTTCAGTGTCTTGTGCAGTGtcacatggatttttttttttacatttaacagcAGGTTCATcaccttttaaatgttttattaaatgtgtaataaatttTGAAATTTGTAATAACATGCAATACAAACTCACCCCACTGAAACACACATATGTCTTATCATATATGCTTGTAGATGCTATTCATGAGAAATTAccaaggaactttgctgcagtACCATGGCTTCAGCAGGCACAACATTTTGCAGAACTAGAAAATAGTCCCTATTCAGGTAACTAGGTGTCACAGATTGGCCAGGCTCTTCCACCAATTTAACACAATGCCCATCATCACCTGAATTTTAATCATGCACAGCTGCATCTCATCACCATGAGACTATAAaaacacacacctcacaccacTCTTTGTCCGGGCTCGTTCATACGAAGCGGACTGATAACGAATACTCTCCACGTATTCAGTAGCAGTGAGCGATCCTCCAGAAACTTACCTAATCTCTGTTTTGTCTCCAGTTTGTCCAGTCTGCCCCGTGTTCCAGTTGGAGGTGTGTGTTTCCTCGTTGTCGTCTCCGTAACTCATCTGGTGGGTGCTCCATCGTTCTGTCCCATCCCCTACTCATCTGGTGTGTGTATTCGGTCAGCATCTATATCATCATCCATACTGCAAGGAAGACGGATAGTTACATCCCCTTCATCTCAACGAACGGAACCTTGCATATCCTTATATTGCTCTGCTgtgaaaataaaagtttacattttctaCTCACCCTGTTTGTCCGTCCGTTTCCTAACAGAAGCCCGGACCTTTAAAGTTAACAGCATGAGCAATCCCGATCCAATTCAGGAGCTGGTAGACGCGATGAAGAGAGTTTTATCGCCAGCTGCACCACTTCCTGATCCACCACCAGC
>TCONS_00018501
GGTGATCGAGGTCCCCCTGGAAGAAATGAGACACTTTCTACAGGCTTTCTTCTAGTGATGCACAGCCAGTCCCGCTATGTGCCGACTTGTCCTGCAGGCCTTACACAGTTGTGGAACGGCTACAGTCTGCTTTACCTGGAGGGtcaggagagagcacacacacaagATCTGGGCCAGGCAGGTTCGTGTTTGCCAGTGTTCAGCACGATGCCGTTCTCCTGTTGTAATATGGACACTTGTGATTACGCCAGCCGCAATGACAAATCCTATTGGCTGTCTACAAATGCCCCCATTCCTAATAAGCCTCTGAAAGGGCAGGATATCGAGGAACACATCAGCAGGTGTGTGGTGTGTGAAGCTCCAACACCAACCATTGCAATACACAGTCAAGACCGTCTTGACCCAGTGTGTCCACCCAAATGGAGGAGCCTCTGGACCGGATTTTCATTCATGATGTATACGGGGTCAGGGGATGAAGGCGGTGGACAGTCTCTGACATCAACAGGAAGCTGTTTGCAAGACTTCCGCAGTCAGCCATTTGTGGAGTGCCAAGGTCCCCGTGGCACATGCAGTTATTTCGCCAGCATCTACAGTTTCTGGATGACTATAGACATGGAGCACAATGACTCCAGTCCTCACGGTCCTGTGATCACAGAGGAAAGGCAGCAGCGCGACAGCACCAGCAGATGCAGCATCTGCATGATGAATGACCCCAACCAATGA

Function

symbol description
col4a4 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen fibril organization; notochord development; and skeletal system development. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in hypodermis; lens; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal recessive Alport syndrome; benign familial hematuria; and end stage renal disease. Orthologous to human COL4A4 (collagen type IV alpha 4 chain).

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0030903 notochord development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101001-1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen fibril organization; notochord development; and skeletal system development. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in hypodermis; lens; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal recessive Alport syndrome; benign familial hematuria; and end stage renal disease. Orthologous to human COL4A4 (collagen type IV alpha 4 chain).

Ensembl:

ensembl_id ENSDARG00000002831

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018500 False 10607 mRNA 0.46 48 35951888 36055401
TCONS_00018501 True 723 mRNA 0.52 3 35956842 35960250

Neighbor

gene id symbol gene type direction distance location
XLOC_009409 irs1 coding downstream 21818 35888549 ~ 35930070 (-)
XLOC_009407 NA coding downstream 65515 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 coding downstream 171083 35780040 ~ 35780805 (-)
XLOC_009406 NA coding downstream 275903 35614234 ~ 35675985 (-)
XLOC_009404 CR848683.2 coding downstream 290520 35414466 ~ 35661368 (-)
XLOC_009411 ostn coding upstream 173434 36228835 ~ 36249087 (-)
XLOC_009412 si:dkey-23k10.2 coding upstream 273967 36329368 ~ 36347895 (-)
XLOC_009413 si:dkey-23k10.5 coding upstream 293608 36349009 ~ 36357889 (-)
XLOC_009414 si:dkey-23k10.3 coding upstream 302743 36358144 ~ 36369743 (-)
XLOC_009415 NA coding upstream 366190 36421591 ~ 36437846 (-)
XLOC_009405 CR848683.1 non-coding downstream 483088 35440740 ~ 35468800 (-)
XLOC_009416 NA non-coding upstream 444805 36500206 ~ 36503189 (-)
XLOC_009419 NA non-coding upstream 729078 36784479 ~ 36784773 (-)
XLOC_009420 AL953844.1 non-coding upstream 818850 36874251 ~ 36874366 (-)
XLOC_009422 CR848749.2 non-coding upstream 1203953 37259354 ~ 37264265 (-)

Expression


Co-expression Network