XLOC_009411 (ostn)


Basic Information

Item Value
gene id XLOC_009411
gene name ostn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36228835 ~ 36249087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018502
TGGAATACAATTTGAATAAAATTAAGGCTAAAGCAAAGAATCAAAGCAGAGCAAGTCACGTTTATTTCAGCTCTACACAGTAGGCCTAAGGACTCCTTAGAAGATTAACTGAACATTCTACATCTATGAAAGAGCAATAAAATATTTCTGAGGTACAGGCGCATCTGATTgtatctgtacacacacacacacacacacatgcacgtctCCTGGCTTCCCCTCTTGGTGTCCTCTgattttccaaaacattttactgagagagagagagagagagagagagagagagagagagagagagagaaggaaaagtgaaagagagagagggatcATCGTAGGGTCTCTGTGGAAATTTTGGTGTGGTAGACAGGCCTGGCCGCTCTGCTCTTTATTTAACAGTGGGAGTAAAGAGAGATGAGCTCTGTGTGTGCAGATAAATATAGTGTGAGAACAGGCAGTCTGCTGGGGAACTCTTCACAAGTCAACGCCACCTGACTTTCTCAGACCGACAGAGACCTGAGCTCCCTTTTCCCCTGTTAGCGATCAAATGCAAGATGCAGGAGACCATCCATAAGCACGCAGAGGTTGCCAGATGCTCATAGTTTATATACATGCCAAAGAGACGGAGATAACTCCAATGTTTCTTATTAAACCTATGGAGTTTAAAGGTTAGAAGCTGACCTTCCAGGCACCTTTGGCCatcatttctgtgtgtgtgagccAAGAAAGAAGGACAGAAAGAGACACACATTCAAACGTGTCCAGCTGCTCCCTTGGGTAGCTATTTAGTTTGTAATGGTAATGAGGATGAGAGGGCTGGGGAGAGACGGCTTCAGGGCGAGCCACAGTGGAAAACCTGCACAAATGATGTCAGAGCAATCGCGACCACCGATTGGAGTGGAGATTCCCGGCGAGAGCCTATAAAACCCGGGAAAGACAACAGCAGGAACCAGCAAAGGCAGAGAACGTGAGAAATTCCAGGAACTGCACcgtgtccatctgtccgtccccCTGTGTGACTGAAACCGAATCAGATTAAGGATGCTGGGCTGTGGATGTGTGCTGCTCTCTTGTCTGCTGACACTGACCTTGTTCCACTGCAGTGCCGAAAGCCTTCACATACCGCAAGGAAGACCAGAGTATGTGGAATCTTCTGTCGTGGAGGGCCGCAGTGTCCAGCGAGGCCAAATGGAGCAGAAAACCTCAGGAGCACTGAGTGCTAAACTCCTCCTGCACGACCAGTTGGTTCGGCTGGAGAACGATGTCATTGAGACCAAAAGGAAACGAAGCTTCCCTGGATCCAACACGCCACTGGACCGTCTGTCAATCAGCACCATGGACCCTAAAAGCAACAAGCAGAGAAAGGCTGTTGAACTGCCGCGGCGGCGAGTCAGCGTGCCGATTGACCGGATTGGTGTAGGCCGCCTTCCCAGCAGCCGAGGATAAGCTCCCCCCATGACCACGCCCCCGGCAAATACAGGGGAATATTGCAGGTAGATGATATGCATGATAAGCACACCAGCCAACACAACTCACTAACCACTGAACGATCTCAGCGTCCTCAACACACGTTTAATCATCGCTGCTCCAGAGCTGTTCTTTCTCTTTAAATGCAGAATTAATATCTGATTACTATCAGTTTGGATCcattatcattttatttcaaCATATAAACTGTTTTTAGAGTAGTGCAGGGAGCAAAACCTGGAAGATCATATTAGTTTCCCAAAGATTAGCATATATGCTAAGGTTTtacaattgagtttttttttttttttttttggttcatgaataaaataaaggtaTTATGAAATATGGGCTGTGTCCAAAAAGTTAGGCAGCTGACTTGTTGCCTTGCTGCACTATCAGTCACTCTGGAGGTACGTTTCTTTATCAAAACTGATTTCagaggctgcgtccaaaatcgccTAGGCCTACTAATCAGtatgtactgcatttgaatt

Function

symbol description
ostn Predicted to enable signaling receptor binding activity. Acts upstream of or within cartilage development and endochondral ossification. Predicted to be active in extracellular space. Is expressed in corpuscles of Stannius; head; heart; and heart tube. Orthologous to human OSTN (osteocrin).

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0009755 hormone-mediated signaling pathway biological_process
GO:0001958 endochondral ossification biological_process
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121211-2 Predicted to enable signaling receptor binding activity. Acts upstream of or within cartilage development and endochondral ossification. Predicted to be active in extracellular space. Is expressed in corpuscles of Stannius; head; heart; and heart tube. Orthologous to human OSTN (osteocrin).

Ensembl:

ensembl_id ENSDARG00000054055

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018502 True 1961 mRNA 0.46 5 36228835 36249087

Neighbor

gene id symbol gene type direction distance location
XLOC_009410 col4a4 coding downstream 173434 35951888 ~ 36055401 (-)
XLOC_009409 irs1 coding downstream 298765 35888549 ~ 35930070 (-)
XLOC_009407 NA coding downstream 342462 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 coding downstream 448030 35780040 ~ 35780805 (-)
XLOC_009406 NA coding downstream 552850 35614234 ~ 35675985 (-)
XLOC_009412 si:dkey-23k10.2 coding upstream 80281 36329368 ~ 36347895 (-)
XLOC_009413 si:dkey-23k10.5 coding upstream 99922 36349009 ~ 36357889 (-)
XLOC_009414 si:dkey-23k10.3 coding upstream 109057 36358144 ~ 36369743 (-)
XLOC_009415 NA coding upstream 172504 36421591 ~ 36437846 (-)
XLOC_009416 NA coding upstream 251119 36500206 ~ 36503189 (-)
XLOC_009404 CR848683.2 non-coding downstream 567467 35414466 ~ 35661368 (-)
XLOC_009405 CR848683.1 non-coding downstream 760035 35440740 ~ 35468800 (-)
XLOC_009419 NA non-coding upstream 535392 36784479 ~ 36784773 (-)
XLOC_009420 AL953844.1 non-coding upstream 625164 36874251 ~ 36874366 (-)
XLOC_009422 CR848749.2 non-coding upstream 1010267 37259354 ~ 37264265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_03435080_03439025 NA coding CI01000095 null 3435009 ~ 3439293 (+)