XLOC_009417 (si:dkey-262k9.4)


Basic Information

Item Value
gene id XLOC_009417
gene name si:dkey-262k9.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36506014 ~ 36533437 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018511
GATCTAGACACAAACGCCGTTCAGACAAAGAGTTACAgtgctgatacacacacacacaatgtgcaTGAGGCTGGCATTAACGCAGTTTGAATTGCAGACAAAAGCCGATGAAAGGGGCATAAAGAGGACTGGCAGATGTGGACAGAACGTGGGGCCTCCAAACCAGAAGAGGAAGTTGAACAAGGGCGTGAACACAACTCCATTTTTCTCTCCGCTACGAGGAACCGGTAGATGCTGCGCTCTATGAACTGATGTGATACCAGAGTCTAAAATGAACACCAAGatcatgtTACGAAGGGCGTCTCTTTTTCTGCTGCTTGTCTTCAGAACTTATGCAGCtgaaaacatgacagaaacagagacttcaccaccaccaccaccggAAAGCTCCACATTTAACACAGATCCACCCATGAAAAAGAATCTTGATAACCAGACAGGTGTCACAATGAGCCCAGAGCTTCAGCAGTTTAACCTCTCTAAACCTACCGTGGTCAGAAGCATCTCTACAGATGCCCCGATGACCATTCCTGTGACCTCCAGCAAGACGTCCACCACTCAGCGGACCACAACCACCAGCAAAAACGTCACATGGGATAAGAGATGGGATGAGCCGTTTCATTACGATTATTCGTCTCTGCGTCGAGTAGGTCTGGTCATCGCTGCTATACTCTTCGTGATGGGCATCTTGGTGCTTGGCTGTGGCAAAGTGAAACGAATGCCACGCTGCCGGATAGGCAAAGAAAGTTCATACGAGGTGACCAGAAGTTAACACTCTTCGCCTTGATCAATAAACAGAAGAGCAGCAGGAGAACACAGAGGAGCCAGTCAGACCCGTTTCTACAGCGGTTACAGACTTTCATTTCCCCCCTGTGAGAACACCATCATAAGGACAAGATGgagaggttgtgtgtgtgtgtgtgtttctgttcatTATTTCAGCCTGATTTGCTGGTTTGTCACACTGAGGCGGCGGGGGAATAAGATAAACGCCAGCGGTAACACAACGGCTGGGACTCCGGCAGATCCCAGCGTAATCACGCGCCTCAGACACAAAAATCCCTTCATCCCTCCGCTCTCCTGTTCCAAACCGCTCTGTTTAAGCGTCAAACTTTGTACAACATAGACCTGTACTTgtgttttatgattattatttcaaTAGTGTGCGTCCTCAGATGTGTCAGTCATCTGGAAGCTCTGTGTGGCTCACCGGCGCCCTCAAGAGGCCTTCAGATTTATTAGTGTTTCTCCCGCGAGGAGGGAATAAAAAAAACAGGGTCTGTTCAGTGATTCATGTgtccagtggcgcccccagaaaagtttcttaggggtggccagaagaggccgctccaaatcttgg
>TCONS_00018512
GGCATAAAGAGGACTGGCAGATGTGGACAGAACGTGGGGCCTCCAAACCAGAAGAGGAAGTTGAACAAGGGCGTGAACACAACTCCATTTTTCTCTCCGCTACGAGGAACCGGTAGATGCTGCGCTCTATGAACTGATGTGATACCAGAGTCTAAAATGAACACCAAGatcatgtTACGAAGGGCGTCTCTTTTTCTGCTGCTTGTCTTCAGAACTTATGCAGCtgaaaacatgacagaaacagagacttcaccaccaccaccaccggAAAGCTCCACATTTAACACAGATCCACCCATGAAAAAGAATCTTGATAACCAGACAGGTGTCACAATGAGCCCAGAGCTTCAGCAGTTTAACCTCTCTAAACCTACCGTGGTCAGAAGCATCTCTACAGATGCCCCGATGACCATTCCTGTGACCTCCAGCAAGACGTCCACCACTCAGCGGACCACAACCACCAGCAAAAACGTCACATGGGTTCATACGAGGTGACCAGAAGTTAACACTCTTCGCCTTGATCAATAAACAGAAGAGCAGCAGGAGAACACAGAGGAGCCAGTCAGACCCGTTTCTACAGCGGTTACAGACTTTCATTTCCCCCCTGTGAGAACACCATCATAAGGACAAGATGgagaggttgtgtgtgtgtgtgtgtttctgttcatTATTTCAGCCTGATTTGCTGGTTTGTCACACTGAGGCGGCGGGGGAATAAGATAAACGCCAGCGGTAACACAACGGCTGGGACTCCGGCAGATCCCAGCGTAATCACGCGCCTCAGACACAAAAATCCCTTCATCCCTCCGCTCTCCTGTTCCAAACCGCTCTGTTTAAGCGTCAAACTTTGTACAACATAGACCTGTACTTgtgttttatgattattatttcaaTAGTGTGCGTCCTCAGATGTGTCAGTCATCTGGAAGCTCTGTGTGGCTCACCGGCGCCCTCAAGAGGCCTTCAGATTTATT
>TCONS_00018513
AACACAACTCCATTTTTCTCTCCGCTACGAGGAACCGGTAGATGCTGCGCTCTATGAACTGATGTGATACCAGAGTCTAAAATGAACACCAAGGGAGTCAGTGTCAATGATTCCTATTTACTTTGAATGGATGACGTCGAGCATggccgaactgaattgtggatctgtcggcaaTGCTTCAGCAGCGTTGCTCACAGCAGAAGTTAGAcgtttctcaacttttcaagtgccaacggaagcatcagccaaacATGACagctgctatgatgatcgtgtCAGCCTCAAAACACGCCCTCCATCAAGagttgatgctgaagccctgtGAGAATTGCGTGTTACTCTCATTTTTCTAGAGTAAAGGAATATGTCTGTGTTTCTGTCCTCTTTGTTGGCTATAATTTAgcctgaaatttatttatttattttgttttactttgttttttaaaaagttttacatgCAGTGAATGAAATGTAAGAATATATGGATTCTAAAAAATGACTAAATGGGCTGTATTATTCATGCCAGGCCAGTAGCTGGTGACGTTAgcttgtaaaacaacaacaaacgcTTCACCTATTAAAGAAGCAAATCTTAAATTGATTTGGGATTTTTACGCTATCTTAAAAAAGATCTTATATTTTATTAGGAAATCTTAAAattgtgtcattaagtttgaaaATCTGCTTTTAGGTCTGTTAGCAAGCAACCACAAGCTGCTAATAGGTTAGCATAAACAAAAGGATAAAACAGGCAAGCTTTAATTTTAGTATTGTGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000089838

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018511 False 1360 mRNA 0.49 9 36506014 36533437
TCONS_00018512 False 974 mRNA 0.48 6 36506134 36533322
TCONS_00018513 True 776 processed_transcript 0.37 2 36529465 36533247

Neighbor

gene id symbol gene type direction distance location
XLOC_009416 NA coding downstream 2825 36500206 ~ 36503189 (-)
XLOC_009415 NA coding downstream 68168 36421591 ~ 36437846 (-)
XLOC_009414 si:dkey-23k10.3 coding downstream 136271 36358144 ~ 36369743 (-)
XLOC_009413 si:dkey-23k10.5 coding downstream 148125 36349009 ~ 36357889 (-)
XLOC_009412 si:dkey-23k10.2 coding downstream 158119 36329368 ~ 36347895 (-)
XLOC_009418 nphs1 coding upstream 20386 36553823 ~ 36939655 (-)
XLOC_009419 NA coding upstream 251042 36784479 ~ 36784773 (-)
XLOC_009420 AL953844.1 coding upstream 340814 36874251 ~ 36874366 (-)
XLOC_009421 zmp:0000001114 coding upstream 488581 37022018 ~ 37104165 (-)
XLOC_009422 CR848749.2 coding upstream 725917 37259354 ~ 37264265 (-)
XLOC_009407 NA non-coding downstream 619641 35761681 ~ 35886373 (-)
XLOC_009408 CR854907.1 non-coding downstream 725209 35780040 ~ 35780805 (-)
XLOC_009406 NA non-coding downstream 830029 35614234 ~ 35675985 (-)
XLOC_009432 CR848836.1 non-coding upstream 1194397 37727834 ~ 37729166 (-)
XLOC_009444 CR944667.3 non-coding upstream 1343279 37876716 ~ 37880887 (-)

Expression


Co-expression Network