G197352


Basic Information

Item Value
gene id G197352
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5259318 ~ 5276453 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224053
CTATTAACTAGTTGCTTATTAGCATGCATATTACTAGGATATTGGCTGTTTATTAGTACTTATAAAGCACATATTAATGCCTTATTCTGCATGACCATTTTCTGCATCCCTTAATCTTACCCAATTCCTAAGCTTAAGAATTACCTTCCCTTATTGAGGCAAAGTCATAGTAAATAGTTACTTAATAGTGAGAATTGGACCCTAAAATAAAGTGTGACCTAATAATGTGTTAAATATGGATTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAAGAACAGATTTTTATTGTCTTTTCCACAAACAATACAGAGGAGCCATGTTGTTCAAACAACAGTTCTAGAACTTCTGGAACTGCTTCTTGGCTCCAGCTGCCTTGGTGACCTTCAGGACGTTGAACCTCACGGTCTTGCTTAGAGGTCGGCATTCTCCAACTGTTACGATGTCACCAGGAGTCACGTCCCTAAGCATGGGGAGAGGTGGACAGACATGTTCTTGTGTCTCTTCTCAAAACGGTTGTACTTGCGAATGTAATGCAAGTAGTCCCGCCTGATGACAATGGTCCTCTGCATCTTCATCTTGGTCACCACACCTGGAAAAAGGTGACAACCAAGAAGTTCACATATGTAGATATCGTGGCTAGGTATTACATTTTCTTTGCTTTCCAAAAGGGCTAAGATATAGTAAAATTAGATAGAGGGAGGCATCAGTAAAGCCATTAGGCATTATCTTCAAAATCGTTTCAGAAGACCATCGTGAGAAAACATCATCTGCACCCCAATAAAACTACAATTACTCCAAGAAGAACTACAAAGACTCACCGGACAGAATCCGGCCTCTGATGGACACGTTTCCAGTGAAAGGGCATTTCTTATCGATATAAGTGCCTTCAATAGCCTGTTGGGGGTTTTGAAGCCCAAGCCAACGTTTCTGTGGTAACGTGGGAGCTTTTCTTTGCCACTTCCTTCAACAGCCAGAACCCGCTTCTTGTTCTGGAAGATGGTGGGCTGTTTCTGGTAAGACCTCTCGTTCTGAAACACAACACAAGCACAGAGTCAGCCATATTCCTTACACACCAATGGATGCTGATATAATGTTTAATGTAACAGACCACATAAAAGCCTGATTAATGGACACTTTTGACTAAGTATCAAAACGGCTTTAACTAAACATTTTAGGTATTTTTGCTGCATCAGTGATGCCATAAGGCAGTGTCGTCAGAGTCTCTTCGAGACTTGGAAGACCATCGTGAGAAAACATCATTTGCAGCTTGCTGCCCATTTAGAGCATGTCAACTCCACCAAAATGGGCTTTTGGACTCAAGTAACATTGAGACTATTGCTACTGGAATTTTAGCATATCCTTCCTCACCTCTCAAAGCAAAGCCATCCATGTGCTGGAGTGCTTTACAGACAAATTCAGTTATTTTAATCACTCGACGAAGTTGATCCTGCATACTAAATCCAGCTGTCTCTCTTAAAACAACTGTAGTCCATATAAACAGTTGCATGTTTAATAAGTCACGTTCTGTTCGTCTGGTAAGGAAAGGCCGCTCGCGTTTCCGTTCAACAACGCTTCCCACCCGATAGCCTGAGACGAAAAACGCGTATTCTAGTCCTAAATGTGGTCCATTTGGACATCATTGTCTCCATGATGGTTTCTTCGCTGTTCATCTACCAGAATCTGTGGCTTTCAGCTGAAGTTTAACATGAAATCAACTGGGTTTTCATGACCACGCCGTTTGAGCTCACGTACCTGTGCGTCCGCCATCTTCGCCAGCCGAG
>TU224052
ATAAGAGTAGGATGCTTTTGCAAAGTAACTTCATTATAGACTACAGTATACCAGGGAAATCAATAGAAACATTTAAAGAACAGATTTTTATTGTCTTTTCCACAAACAATACAGAGGAGCCATGTTGTTCAAACAACAGTTCTAGAACTTCTGGAACTGCTTCTTGGCTCCAGCTGCCTTGGTGACCTTCAGGACGTTGAACCTCACGGTCTTGCTTAGAGGTCGGCATTCTCCAACTGTTACGATGTCACCAGGAGTCACGTCCCTGAAGCATGGGGAGAGGTGGACAGACATGTTCTTGTGTCTCTTCTCAAAACGGTTGTACTTGCGAATGTAATGCAAGTAGTCCCGCCTGATGACAATGGTCCTCTGCATCTTCATCTTGGTCACCACACCGGACAGAATCCGGCCTCTGATGGACACGTTTCCAGTGAAAGGGCATTTCTTATCGATATAAGTGCCTTCAATAGCCTCTCTGGGGGTTTTGAAGCCCAAGCCAACGTTTCTGTGGTAACGTGGGAGCTTTTCTTTGCCACTTCCTTCAACAGCCAGAACCCGCTTCTTGTTCTGGAAGATGGTGGGCTGTTTCTGGTAAGACCTCTCGTTCTGTGCGTCCGCCATCTTCGCCAGCCGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU224053 False 1782 lncRNA 0.41 4 5259318 5276453
TU224052 True 635 TUCP 0.47 5 5274382 5276453

Neighbor

gene id symbol gene type direction distance location
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 378649 4861221 ~ 4880669 (+)
CI01000046_04841558_04852685 NA coding upstream 406142 4841558 ~ 4853176 (+)
CI01000046_04811748_04819011 ZNF281A coding upstream 439950 4811610 ~ 4819368 (+)
CI01000046_04806234_04808207 NA coding upstream 450983 4805355 ~ 4808335 (+)
CI01000046_04694468_04701075 NA coding upstream 558065 4693655 ~ 4701253 (+)
CI01000046_05279865_05281709 BAXA, BAX coding downstream 3412 5279865 ~ 5282127 (+)
CI01000046_05305482_05310465 NA coding downstream 28740 5305193 ~ 5310479 (+)
CI01000046_05315583_05316990 NA coding downstream 38732 5315185 ~ 5317089 (+)
CI01000046_05335886_05341205 GPATCH8 coding downstream 59433 5335886 ~ 5341888 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 115530 5391983 ~ 5402075 (+)
G197393 NA non-coding upstream 2536 5249761 ~ 5256782 (+)
G197457 NA non-coding upstream 10736 5248350 ~ 5248582 (+)
G197456 NA non-coding upstream 11554 5247299 ~ 5247764 (+)
G197455 NA non-coding upstream 12065 5247045 ~ 5247253 (+)
G197454 NA non-coding upstream 17466 5241553 ~ 5241852 (+)
G197391 NA non-coding downstream 12548 5289001 ~ 5326198 (+)
G197372 NA non-coding downstream 15518 5291971 ~ 5294407 (+)
G197383 NA non-coding downstream 104668 5381121 ~ 5384299 (+)
G197399 NA non-coding downstream 110017 5386470 ~ 5386716 (+)
G197466 NA non-coding downstream 114669 5391122 ~ 5391352 (+)
G196869 NA other upstream 837631 4415530 ~ 4421687 (+)
G197121 NA other upstream 887888 4371011 ~ 4371430 (+)
G197055 NA other upstream 1109538 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1313818 3943794 ~ 3945500 (+)
G196936 NA other upstream 2065047 3186995 ~ 3194271 (+)
G197528 NA other downstream 449668 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1543485 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location