G197372


Basic Information

Item Value
gene id G197372
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5291971 ~ 5294407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224074
TTTGTACAACCATGCTTCAATATTGATGCATACCTAACTGATGCATCTTCATTGCATAATTAAACGGTTCAACAGAATTACTGAAAATGTCCAGAATTTCTAAATGTCATATTAGAGCACATGACTAGCACAGTAAGTGTGTGAAGACGTTTTTTTGCTGTTTGCTTATTTCTCTTTGTAAAGGAAACTCCCTAAGCAGAACTAGGCTGGTGAGGTAAACATGAAACCCGGCTGAATGCAAGAAAAACAGGAAATCGACGACCGCAAGTCAACTTCTGGCTATGTGTACACATGCAGGCAAGTTTGTGTTTCTCACTCTCTCTCTCTTCCTCTCTGTATTAGTATGCTTATGTTGTCTTTATCTGTATTGTCTTTCTAAAGGTGTCGGGTTGTGTGTGCTTGTATGACTTTTAGGCTGTGTACTTGTATGTAAATTTGTATCTTAGCGTGCAAGAGAACCCATCTATGCACTTTCGGTATGAGTTCATCCATGTGTCAATTTCACATGTCAATTGCCTCATGTTTTAATTGCCATTTAAAATCACCTCTTTAAACAGGATCCCTTCGTTCTTGTCGCTCTCCTCTCTTTCGTCCTCATCTCTCTCCCTCTCCTCTCTCAGCACGTCTTTGACAAAGCTATATGCAAAGCAGGGATCTTCAGTTGTAACGTAGTCCCTCAAGGCTGTAACAGCCAGAAATTCGATCTCACTTCTCAGTGGAGACTTCAGCTCTTGACTTTCTTGAGCATAGCTCTGGCAAGAGGATTCCCACTGATAGGAGTACGACGGACCCTCTGTTTCCTGCACAGACACCCTTTCTGTGCTGAGGCCGCTGCTGCTGATGCTGCTGATGCACACTGGGTCTGTAACCTGAACCAAGAGGACACAACAAAGCTCTATGATAATTACACTAATTACAGTTAATTCAGTCTAACCTGAATGAGCGATGATGAGAGGCACCCGCCGCTGTCCTGCTCCTGCACACCGGTGACTCCCACGAACTCGCGGGATCTGCTGTCCTTCTCGTCCTGTCTCCGCCGCTGTCTCTTACGACGTTTCCTTTTGGACCGACTGCGAGAGACGGAGCCAACAGGCGATATGGAGGAGATAACACGTGGTCCATTTTTGTGGCTGAAAATATATTTAAGTTGTAGTGATATATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU224074 True 1162 lncRNA 0.44 2 5291971 5294407

Neighbor

gene id symbol gene type direction distance location
CI01000046_05279865_05281709 BAXA, BAX coding upstream 9844 5279865 ~ 5282127 (+)
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 411302 4861221 ~ 4880669 (+)
CI01000046_04841558_04852685 NA coding upstream 438795 4841558 ~ 4853176 (+)
CI01000046_04811748_04819011 ZNF281A coding upstream 472603 4811610 ~ 4819368 (+)
CI01000046_04806234_04808207 NA coding upstream 483636 4805355 ~ 4808335 (+)
CI01000046_05305482_05310465 NA coding downstream 10786 5305193 ~ 5310479 (+)
CI01000046_05315583_05316990 NA coding downstream 20778 5315185 ~ 5317089 (+)
CI01000046_05335886_05341205 GPATCH8 coding downstream 41479 5335886 ~ 5341888 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 97576 5391983 ~ 5402075 (+)
CI01000046_05481838_05537970 NA coding downstream 187431 5481838 ~ 5538151 (+)
G197352 NA non-coding upstream 15518 5259318 ~ 5276453 (+)
G197393 NA non-coding upstream 35189 5249761 ~ 5256782 (+)
G197457 NA non-coding upstream 43389 5248350 ~ 5248582 (+)
G197456 NA non-coding upstream 44207 5247299 ~ 5247764 (+)
G197455 NA non-coding upstream 44718 5247045 ~ 5247253 (+)
G197383 NA non-coding downstream 86714 5381121 ~ 5384299 (+)
G197399 NA non-coding downstream 92063 5386470 ~ 5386716 (+)
G197466 NA non-coding downstream 96715 5391122 ~ 5391352 (+)
G197386 NA non-coding downstream 137048 5431455 ~ 5769358 (+)
G197410 NA non-coding downstream 292774 5587181 ~ 5625506 (+)
G196869 NA other upstream 870284 4415530 ~ 4421687 (+)
G197121 NA other upstream 920541 4371011 ~ 4371430 (+)
G197055 NA other upstream 1142191 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1346471 3943794 ~ 3945500 (+)
G197528 NA other downstream 431714 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1525531 6808507 ~ 6821543 (+)

Expression


Co-expression Network