G197399


Basic Information

Item Value
gene id G197399
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5386470 ~ 5386716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224101
CGTTAATGTTGTGAGCGTCGATCTGGGCACGCAGGTCCTTGCTGACCCGTTTTTGCCCCAAGAACTTCTTGAGAAACTTGGTGCTGTATTTCAGATTGTCCCCACATACGCCCCACTGCCAGGCCTCGCGGTGCTGCAGACCAGGAGAATCGTCACAGGTACAGCGCTCCATGCGTCCCGAGCTGCACGCTTTGGCCAGTGCGTGAGACAAGGCCGCTGATGACACCGCAAGCAGGAAGGCTGTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224101 True 247 lncRNA 0.58 1 5386470 5386716

Neighbor

gene id symbol gene type direction distance location
CI01000046_05335886_05341205 GPATCH8 coding upstream 44582 5335886 ~ 5341888 (+)
CI01000046_05315583_05316990 NA coding upstream 69381 5315185 ~ 5317089 (+)
CI01000046_05305482_05310465 NA coding upstream 75991 5305193 ~ 5310479 (+)
CI01000046_05279865_05281709 BAXA, BAX coding upstream 104343 5279865 ~ 5282127 (+)
CI01000046_04861221_04879259 MPP3A, MPP3 coding upstream 505801 4861221 ~ 4880669 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding downstream 5267 5391983 ~ 5402075 (+)
CI01000046_05481838_05537970 NA coding downstream 95122 5481838 ~ 5538151 (+)
CI01000046_05562155_05568637 MLX coding downstream 175241 5561957 ~ 5569463 (+)
CI01000046_05635252_05642052 DLX4A coding downstream 247055 5633771 ~ 5642292 (+)
CI01000046_05643458_05646109 DUSP3B coding downstream 256742 5643458 ~ 5646116 (+)
G197383 NA non-coding upstream 2171 5381121 ~ 5384299 (+)
G197391 NA non-coding upstream 60272 5289001 ~ 5326198 (+)
G197372 NA non-coding upstream 92063 5291971 ~ 5294407 (+)
G197352 NA non-coding upstream 110017 5259318 ~ 5276453 (+)
G197393 NA non-coding upstream 129688 5249761 ~ 5256782 (+)
G197466 NA non-coding downstream 4406 5391122 ~ 5391352 (+)
G197386 NA non-coding downstream 44739 5431455 ~ 5769358 (+)
G197410 NA non-coding downstream 200465 5587181 ~ 5625506 (+)
G197417 NA non-coding downstream 268863 5655579 ~ 5665352 (+)
G197529 NA non-coding downstream 329640 5716356 ~ 5719969 (+)
G196869 NA other upstream 964783 4415530 ~ 4421687 (+)
G197121 NA other upstream 1015040 4371011 ~ 4371430 (+)
G197055 NA other upstream 1236690 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1440970 3943794 ~ 3945500 (+)
G197528 NA other downstream 339405 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1433222 6808507 ~ 6821543 (+)

Expression


Co-expression Network