G197410


Basic Information

Item Value
gene id G197410
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5587181 ~ 5625506 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224112
TAACAACCAACACCTATCAGCGAACTCTCGCTTCTCCAGATGCCTAAAAGGATGTCGTAACTGCAGATTGATGTAAATTCTACTAATAAATCAAACAGCTATTTGGATTATTGGCATAGGGATGATGGAAATCGTGGATGAGGGGATCGGTGACATGGAGATGCACACACCTCGTCTTGGCTGTGATAAGTAATAATCTTTCACTCACACAGATTAACAGGACTGAAGATGCTGGAGACACAAGGGATTGGAAACACACAGGAGAATCACTGGAGAATCATAGGAGATAACTTGAAGCTTGAGAATACAGATCATCAGCCAGACTGGCATCATCTTGTTTGCCTGAGTGTCCTGATGCCCGTTGCGACACAGGTCCCCTGCAGCTCAGACACCCACAGTGCTGTGATTACAGAGAGTAATGAACCACAGCCACAGGAAGGGGCACCACCAGCAGACCACCAGTTCCCATATGTGCCCCAGGCCTGCAGCTCAGCCTCCAGGATGAAACCGCTGGGCGGGTAAACACAGGGGAGGGCACACAGCCACAGACAGATTGCCATCTCTCATAATCCACAGAGGGCACGACGGAGAGGAACAGCAGCGGCCGGGTCAGACAGGGAGGAGTTTGGCTAACTTATCTATGAGTCTAATCAGCCTCTGACCATACATAAGCAAAGTATTCAGTGGCTGAATGTGTCATGAAAAAGTACAGTTCCTTTTTACTATTTTTGTGTTTTTAGTGTATTTCCCCAGTCAAACCTAAACAATGCATAATAGCCATGTTAAATGTGAGTGAATCACTTCTTTGTATGAATTTTCCAATGTACTGTTCAATAGTTTGGTGTCAGTAAGATTTTTTTTCTTGAAAGAAGTTATTACTTTCATTCAGCAAGGATGCATTAAATTGATAAGTAAAGTCTTTTATAATTTTACAAAAGATTTATCTTTCAAATAAATACTGAACTTTTTTATTCACTGAAGAATCCTGAAAAAAAAAGTCATACAGATTTCATGAGGGTAAATGATAATTTTTTAGTTTTTGAGTCAACTGTCCCTTTAAGGAAAAACACTGTGATGTGACCAGTTACATAGATTAAATGATAATGCCATCACAGCAATTGTCTATTTTACTTTTAGATGTAGTGCCTCTGTACTGTATATTGTGTGATTCCCCTTTCACCATCTGTGTGTTATGGGTGAGGATTTGATATCAGGCCAAAAAGATCACAAGTAGGCCTATGCTATAAATTTGTGGTGGCAAAGCATGCAATCTGTGAAAATCAGACTCAAGGTGCTGTGTCCTGTCAAACAAATCGTCTCTAGATGATTAATGCCAGATGTATGCCACACAAAACACTGTGTTTAGCAGACACTGTGACACCTAGTTTTTCAATGGTGTGAATTATATTGACGCCTGATAAATTTAATGCCTGTGGGTTTCCTAGGTACATTGTGTATCTGTCTGTGCTGTTTTGGTTCTTTTCCAAGGGTGTGAGAAGCAGCATTCTCACACTCCTCAGCAAGCCTTTTAGTGTCTTCAAATCATATAAATGTGTTTTTAAAATATTATGTACAATTTTTCGCCTCAGTAAATGCACATTAAACCTTTAAATTGTGATTTTCAACTAGTGATATAGGTTAAGTCCATCAGAGACCCCAGAAAGGATTCTTATCAATTCTCAAAGTTGCTTCCTTTCTAAACTGAGTTAAGTGAAGTGCCTCTTTAAGCAGCGGCTTGTAGAGTAGGCCTAATTCTGTTTAAACAAAGTGTTGTTGTACTGAAATTTATCAAAGTACGATGCCTTGCTTTGACAAAGATACCCAGCTTGAAGATAATTTGAATGATAACACTATAAAATACTCTGGACTGAAGTCACCTGACTCTCAAATGGTTTTGTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224112 True 1902 lncRNA 0.40 4 5587181 5625506

Neighbor

gene id symbol gene type direction distance location
CI01000046_05562155_05568637 MLX coding upstream 17718 5561957 ~ 5569463 (+)
CI01000046_05481838_05537970 NA coding upstream 49030 5481838 ~ 5538151 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding upstream 185106 5391983 ~ 5402075 (+)
CI01000046_05335886_05341205 GPATCH8 coding upstream 245293 5335886 ~ 5341888 (+)
CI01000046_05315583_05316990 NA coding upstream 270092 5315185 ~ 5317089 (+)
CI01000046_05635252_05642052 DLX4A coding downstream 8265 5633771 ~ 5642292 (+)
CI01000046_05643458_05646109 DUSP3B coding downstream 17952 5643458 ~ 5646116 (+)
CI01000046_05686868_05688748 NA coding downstream 59032 5684538 ~ 5689380 (+)
CI01000046_05756222_05757145 CDK5R1A coding downstream 130524 5756030 ~ 5757489 (+)
CI01000046_05775279_05805016 NA coding downstream 149773 5775279 ~ 5805114 (+)
G197466 NA non-coding upstream 195829 5391122 ~ 5391352 (+)
G197399 NA non-coding upstream 200465 5386470 ~ 5386716 (+)
G197383 NA non-coding upstream 202882 5381121 ~ 5384299 (+)
G197391 NA non-coding upstream 260983 5289001 ~ 5326198 (+)
G197417 NA non-coding downstream 30073 5655579 ~ 5665352 (+)
G197529 NA non-coding downstream 90850 5716356 ~ 5719969 (+)
G197355 NA non-coding downstream 118063 5743569 ~ 5746418 (+)
G197377 NA non-coding downstream 180980 5806486 ~ 5807376 (+)
CI01000046_05808927_05820706 NA non-coding downstream 182051 5807557 ~ 5820759 (+)
G197352 NA other upstream 310728 5259318 ~ 5276453 (+)
G196869 NA other upstream 1165494 4415530 ~ 4421687 (+)
G197121 NA other upstream 1215751 4371011 ~ 4371430 (+)
G197055 NA other upstream 1437401 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1641681 3943794 ~ 3945500 (+)
G197528 NA other downstream 100615 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1194432 6808507 ~ 6821543 (+)

Expression


Co-expression Network