G197528


Basic Information

Item Value
gene id G197528
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5726121 ~ 5742684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224234
CACCCTTTTCTGTTCCTCCTCAGCATCTGCAAACAGTTTCCTAATGTTGGCCTCAGATTCACCCACATACTTGTTGAGGATTTCTGGACCGTTGACTATCTTTGGCTCTCTGGCATTCAACATCTTGCCGATCTGTCTGGCCATCAGTGTTTTACCACAGCCAGGAGGACCAAAGAGCAGGATGCCTTTCACATGCTTACAACCCATCTGCTCCACGATGTCTGGAGGAAAGACTCGAGAGGCGAAGGCCCTGCGGAAGATATCTGAGAACTCCTTGTCTAGACCACCGATGCCCATTTTCTCGAAGTTCCATTCAGGGTTAATGATCGTCTGACGGGCTTCTTTGGTCTTGGCCTTGCCAACTAGAGTAAGACATGAACTCTCTGATTTTTCAAAGATCACTTGACTGTTTCCAACCAACAGACCGATCTCAATCTTTTGTTTTTTGCCAGATGCTGGTTCCCCTTTCAGTATGCTGGAGTCCATCGCCTCAATGTCCTTGATTACTAGGCCAAAGAGTTTGTCACAGAAACTGAAGACCAACTGCTGCCCCACGGAGAAACCCTGATTGTTGAAATGCTGGATAAACTCGGCAGCCATTTTGTCTGAGTCGTAAGGACTGGAGTCGGTGCTCTTCTTCTGAAGGAAGTCAATCTCAATAGTCATGGCACCAATGCACTGCTTGGATTTGTCGAAGTTGTAGTTGGCCACTTCTATTTCTTGTCCAATGGACAGGCCTGCCCATTTCCTCTGTGGCAAACTGAAAGCGATGGTTCCAGGAACCACAGAGTGGTGACTCTTCACTGTGAACACAAACTTGTGGGTGGGTGTTGTCCTCACAGTCACATGCTGTCCAGACTGCAGGTCTTTCTCGCTAACTACTGCACAGTTCGTCAGTGACAGCTCATCTGTTGGGCATCGAGCCGCTTGCATTGTCCGGGTCGCCATGTTTGCGTTGGTGATGCTGCTCGGGAGAGTTCCACGCAGCAGAACTAGAGCAGCACTACAGT

Function

NR:

description
PREDICTED: B-cadherin-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU224234 True 1010 TUCP 0.49 9 5726121 5742684

Neighbor

gene id symbol gene type direction distance location
CI01000046_05686868_05688748 NA coding upstream 36741 5684538 ~ 5689380 (+)
CI01000046_05643458_05646109 DUSP3B coding upstream 80005 5643458 ~ 5646116 (+)
CI01000046_05635252_05642052 DLX4A coding upstream 83829 5633771 ~ 5642292 (+)
CI01000046_05562155_05568637 MLX coding upstream 156658 5561957 ~ 5569463 (+)
CI01000046_05481838_05537970 NA coding upstream 187970 5481838 ~ 5538151 (+)
CI01000046_05756222_05757145 CDK5R1A coding downstream 13346 5756030 ~ 5757489 (+)
CI01000046_05775279_05805016 NA coding downstream 32595 5775279 ~ 5805114 (+)
CI01000046_05808927_05820706 NA coding downstream 64936 5807557 ~ 5820759 (+)
CI01000046_05824195_05829999 NA coding downstream 80931 5823615 ~ 5830050 (+)
CI01000046_05837676_05841480 SMARCE1 coding downstream 94992 5837676 ~ 5841825 (+)
G197529 NA non-coding upstream 6152 5716356 ~ 5719969 (+)
G197417 NA non-coding upstream 60769 5655579 ~ 5665352 (+)
G197410 NA non-coding upstream 100615 5587181 ~ 5625506 (+)
G197466 NA non-coding upstream 334769 5391122 ~ 5391352 (+)
G197399 NA non-coding upstream 339405 5386470 ~ 5386716 (+)
G197355 NA non-coding downstream 885 5743569 ~ 5746418 (+)
G197377 NA non-coding downstream 63802 5806486 ~ 5807376 (+)
G197570 NA non-coding downstream 215768 5958452 ~ 5960575 (+)
G197574 NA non-coding downstream 250789 5993473 ~ 5993694 (+)
G197352 NA other upstream 449668 5259318 ~ 5276453 (+)
G196869 NA other upstream 1304434 4415530 ~ 4421687 (+)
G197121 NA other upstream 1354691 4371011 ~ 4371430 (+)
G197055 NA other upstream 1576341 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1780621 3943794 ~ 3945500 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1077254 6808507 ~ 6821543 (+)

Expression


Co-expression Network