XLOC_009422 (CR848749.2)


Basic Information

Item Value
gene id XLOC_009422
gene name CR848749.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37259354 ~ 37264265 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018519
gactgtctattatgttttctttgtgtatgtggacACGAATAAAGTCataccaattatttttatttacataatttgagttcagaagcagaaataataataatgactgaaatgggaaaccatatttgtgaaattcagtaggtggcgataatgctaagGAGTTTGTTggttaccatatatggtttgaCTAAATCGTGTGTGCTAGAATGTGTGCCTAAAACTTGTGTGGTTCTGCggttctgcagctggatatatctcgttgagtctgcagccagacagTTGCAGTCAGCTATATTATCGGATAAAGAAAAATGCTTTTTGAAACATTGGTATTAGTGTACTTTTTGGGACTTGGATTTGCAGTAGTGCATAGAAGCCAAGGTTCCCTCTACACGAAATACGAAGTGGGTGATTCAGCTACTCTCTATTGCAACGTTAGCACAGATGAAGAAGTCGTAAACAGCTGCACATTTTTGTGGGAAATTACCGACGAACTTAAGAATGACTTCATAGATATCACAACCACGCCGAAATATCACAACAGAGTCAGTGTGGCATCCCAAGACCTTTCAAGCATGATGACCATACGAGATCTGGCGGACACCGACACAGACGAGATAATGTGCACACCATTGTGTTATATTTATGATGATCTTCGTTACATCTTGGGTAACGGGACAACTCTAAAAATAACAGaacaagaaaagaaaataaaggaacAAGAAAATTTGGGATTTCCATGGCTGAAGTACCTCATATTCTCACTCAATTGTATAATTTTCAGCATTTCAATGGTAATCTGTATCTATATTATTCGAAAACGGCGTTTTGGGAAATGTGCCCAAAACGAATAATAATGCACTTTTAAACAATTCTCATGCCTAAATCTAAATGGTTAGGCGTTAATTTCATTCAACTAAAATTGACGAGATCAAATGATTTCGAAAGTGAAAgcattttaaactaaacaaaggtggggttatttttttttctaaatgttgacGAGGTTTATTAATTCGATTAACATTTAGCAATAAAGCAGTCAAACTCAAACTATCACAAAGGTGTTTAGTTTAGGCTATTTTGCTTTGCTGTTTATTTTGACGCAGTTTATTGTTTCGATTTAGATTTACCAGTTATGCACTATATGCTATAATCAACTGATTTTTAAACACCTTGTCTTCGTAAGGAAGTAGGcctatataaatgtaatgtaatatcgtgtcaaaatattttcttaaaaaagTCATAGCTGAAATAATCCGTTTCCAGCCATTTTAAGTCAAAATGTAACAAGCTCTCTTTAAATATAGCTTtgccatatacagtatataaaatgtttttaaatctgtAATACTTAATATTTACGTATGTAcgacaatttttatttaaaaaaaaattggattaaaGGTCAGAAAAAACAAGTCTTGAGCCAGAAAAACAACTTACCAGTCGTTTTGCAATTCCATAAATGAAAGTGTTTACCTTATAGGTCGATTTTTCCTTTACAGGTCGATTTTTTTCTATAAATAGGAGGGACCAGGTTCTCAGATTACACCTGTGTGTGAAGATTGGATTGTTCTCTTCCATCAATCTTTGacaacaaaaactgaaaatatgtataaaatatgtatttaacattATTACAAATACATTTTCAAGTATCtcacttcatttgttttattaattttaattctcaagtatataaaaaatgtaataatagagAATTTTCTGTCAGGGCATTTTCCAATAACTGTACAAGCAACACCACTGTAAAAGTAAACAATATGTAGAGAATATTtgaaatacaaataaagtttttacagtttacagtactttttatataatcatgcattatttaaaaaaaaaaaaaaatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatataattatttaaaatatttatttaaatctaatatatataattattaaatctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatgtgcatTGGCAAAATGTGACAAACCACTCCACTGTGGGAAGAAAAATAGCAGGGttatttagatttaaataaatatttttaaaaaaaattcactttcCATATGTTCCCATTTTTATATcatttgaagcttttttttttttacaagtgacaataattttaaaactgttaGACTGGCtattgtgtactgtgtatattatgGATCATACACAcaggcgtcatggtggcacagtgggtagcaagattcgagcatcggctgggtcagttggcatttctatgtcgagattgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttccccccagtttttttaaagtgtaaaaatcaagagaaattaaaatatataactatttgttgaaattttttagttttaacaatttgtttaaattaaaatgttctatctttaaatttctaaatgttcggtgactaaaatataagtttataaatacatctgtttaggtgacgcagtggcgcagtaggtagtgctgtcgcctcacagcaagaaggtcgctaaatcaagcctctgctgggtcagttgccgtttctgtgtggagtttgcatgttctccctgtgttcacgtgggtttcctccgggtgctctggtttcccccacagtccaaagacatgcggtacaggtgaattgggtaagctaaattgtccgtagtgtatgagtgtgaatgagtgtgtatggttgtttcccagagatgggttgtggctggatgggcatccactgcgtaaaacaaatgctggataagttggaaggtcactccgctgtggcgaccctggattgataaagggactgagccaaaaagaaaatgaatgaatgtatgaatatatctgtttacatgcctatattcactgaaaaatggataaaaatattcatttttaaaatggggtgtactctattaagctgagcactgtatgcacatttatatatgtactgtatgcaaaaaaaaaaaaggtttgtgcaGTTCTATTTGAATGTATGTGTAAATATAATGAAGATACTGtataatgcacaaataaaataataaagtaaaatatataatgcacacacatcaaaacaaacttttgtttttgtgtatgtgtgtaaatgaaattgtatgggtgtttcccagttataggttgcagctggaagggcatccaaagCTCAAAACATGtcttggataagttggtggttcattctgctgtggcgaccccagattaataaagagactaagccaaaggaaaatgtatgaaCAAAAAATTGCGATTAATCTTTGCCAggcacttggaaaaaaaaaaacatttttaaaaaactcaaaatgtttCTGTGCCTCTATAGATTTATGTTTGTATGGGATGTTTTTACCACAATAACTGCTAGCACGGAGTCTAATATAGATGCTGATAAGTTAAGGTTTAAATTGTAAATCAatcttttcagaaatgtattAACTTGTAATGTTTTTCATAGGTTTAAAAGCACAATTGCACTGATATGTTAGGAgagaggggggtggggggtggcaCTATGCTCAGTGGttactgctgtcgcctcacagcaagaaggtcgctggttcgagccttaactgggtcagttggcatttctgtgtagagtttgcatgttctccctatgttcgtgtGCGTTTTGTacgggtgctccgattttccccacagtacaaagacatgcactaaaggtaaattgagtaaactaaattgatAGTAtaagagtgtgtttcccagtactgggttgtggctggaagtccatctgctgcataaaaataaatgaaagttgtGGTCAGATGTCTCACTCAGTATGCAAAGATCTTGTGCATTGAGAAGCTTGTTTTTTTACAGTTGCCCCAAAAATTATCATGTTAAAAATTATGCTGTTTTTGGCAACTATACAGTGCACTGATATACGACATTAGGCATAACCAGAGATTGAGCTGATGGAACATTTAGAAAGTATTTCCTGTCTATATATGTACTTTCATGTCAGCTAAGACATCTTCTTTCATGCCAAAATATATATGAGGTTTTAATTacaaatgtttaacatttaaaagGGATTATGTTTACTCAGACGTGTTGCTATGGCTATAGAAAGAAATGCTCACTTAATTATATGCTATGTGTATGgatgaaatgttaaatattaacaacATCATATAGGCTAGTTAGCATGCCTTGAAAAGTTTTTGCAACATCATTGCATCCTGCCACAATACCCCATAAGCTCTATCTGTTTTTGTGTTTCTTAACCACAGCACAGAactcaaaataatatttaaagtgaTGATGAATGATACcattcttattttaaaacatgattaaagtaACTTCTTGATAGACCTGTAAACTTGAGATTATCAGTGTAAATTGTACTCTTTATTGTGAACTGCAAATTAGGTgtgttttaaagttaaaaaaagctTGTACTTCCTGTTTTTATGCTTTGTTTAAAAGCAACCctgctcaaataaaaaaataaaatgaa

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117594

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018519 True 4613 lncRNA 0.33 3 37259354 37264265

Neighbor

gene id symbol gene type direction distance location
XLOC_009421 zmp:0000001114 coding downstream 155189 37022018 ~ 37104165 (-)
XLOC_009418 nphs1 coding downstream 319699 36553823 ~ 36939655 (-)
XLOC_009420 AL953844.1 coding downstream 384988 36874251 ~ 36874366 (-)
XLOC_009419 NA coding downstream 474581 36784479 ~ 36784773 (-)
XLOC_009417 si:dkey-262k9.4 coding downstream 725917 36506014 ~ 36533437 (-)
XLOC_009423 si:ch211-113j13.2 coding upstream 155287 37419552 ~ 37436082 (-)
XLOC_009424 kmt2bb coding upstream 192744 37457009 ~ 37543839 (-)
XLOC_009425 proser3 coding upstream 298317 37562582 ~ 37589600 (-)
XLOC_009426 si:dkey-42l23.9 coding upstream 344477 37608742 ~ 37610434 (-)
XLOC_009427 si:ch211-137j23.8 coding upstream 354739 37619004 ~ 37620167 (-)
XLOC_009416 NA non-coding downstream 756165 36500206 ~ 36503189 (-)
XLOC_009415 NA non-coding downstream 821508 36421591 ~ 36437846 (-)
XLOC_009408 CR854907.1 non-coding downstream 1478549 35780040 ~ 35780805 (-)
XLOC_009432 CR848836.1 non-coding upstream 463569 37727834 ~ 37729166 (-)
XLOC_009444 CR944667.3 non-coding upstream 612451 37876716 ~ 37880887 (-)
XLOC_009453 NA non-coding upstream 1031892 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 1161283 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 1283562 38547827 ~ 38550804 (-)
XLOC_009407 NA non-coding downstream 1372981 35761681 ~ 35886373 (-)

Expression


Co-expression Network