XLOC_009423 (si:ch211-113j13.2)


Basic Information

Item Value
gene id XLOC_009423
gene name si:ch211-113j13.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37419552 ~ 37436082 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018520
ACTGCCCAGAGCTATTGCTTCAATTATAAAGTCTAAGGTTTTAGCAGTGCTACATTCAGAATTCCAATGAGAAAAAGTCTGGCCAGAAAGTCTGGGTCAACACAAGATGATGACAGGACCAGACCACCAACGACCAACAATCTGAAGCCCAAATCCAGCTTTGCTGTGCTGTACAAACCTGGAGATGCAATACACCACCAGACGTATACGCCCACGATTCTCCCTCAAAGTGGCAATCAATCAAATTCAACAGGTGACTACTCCCTTCCTCTGCCGGACATCATGCAGAGTGAGGCCTCCAACCCCTATGTGTCCATACGCCGCCACAAGAGCACCACAGATCTGCCATACAGCCCACAGCGTGGGTACTTGCGTGGACAGAGAACTAGTATCTGCGCCCCCACCGAGGCCGAGCTGGCAATGATGAGGCGTTGCTCTTTACGTGATCCGAACGTTCGTCCATGTTGCCGACATGCTCTTAGCGTTCCCAATATGACCAGTCCAAGCGCTAGCCCTCTGTACAGCACCCCATCCCGCAGTGCTCACTGCACTCCTGTACGGGAAGTGGAGTGCAATGCTAAAGCCCGCAATAAGCTAATTGAAAACGAGAGCGTGCAAACTCCCACATGCCCACCAGAGATTCGCCAGCAGCGTCGCTACGTCTCAAAAGATGGGAAATGCCGAGTAGACTTGGCACACATGGCAGAAAAGGAGCGATTTCTGGCAGACATCTTCACTTCGTTTGTGGACCTCCAgtatagatggtttctgtttgtatTCATGATGTGCTACACGGTCACTTGGTTTATATTCGCAGGGCTTTATTCGCTAAATGCTTTTCTGCGTGGAGATCTTGAACATCCTGCGGACACTGATGTTTGCTTCCAAAATATAGATGGATTTGTTTCAGCGTTGCTCTTTTCAGTGGAAACACAGAGGACTATTGGTTATGGCGCTCGTACAGTCTCACCACGCTGCTATGAAGGTGTGTTTTTAGTCATGGCACAATGTATTGTGGGATCCATGATTGACGCTCTAATGGTGGGCTGCATGTTTGTTAAAATCTCACGTCCTAAGAAGCGAGCCGAAACACTTCTTTTTAGTCGGACTTGTGTTGTGGCCAATCGGGATGACCGTCTCTGCCTTATGTTTCGTCTTGGAGACTTGCGTGAGAGTCACATGGTTGACGCCAAAGTACGTGCTAAACTCATCAAGTCTCGGCAGACATCGGAAGGGGAATTTCTCCCACTGGAGCAATCGGAGATCGACCTGGGCTATGAGAGCGGCTCTGACCGACTGTTTCTAGTGGAGCCGCAAGTGATTCAACACATCATTGATTCCAGCAGTCCTTTCTGGGAGCTCGGGCCAGAGAAGCTGCGGAAGCAACAGTTTGAAATTATTGTCATCTTGGAGGGCATAGTGGAAGCTACAGGAATGATGTGCCAGGCCAAGACGTCCTACATCGAGACGGAGATCGAGTGGGGTGCCCGTTTTGAGCCGTGCATGACTTTGGAGAAGGGCTCGTTCCGGGTGGACCTGCGGCGCTTCCACAGCACATATCCAGTGCCGCTGCCGCCGTGCAGCGCTCAGGACACGCATCACCTGCTGGAGCTCCAGGACTCTCTGAAAGACTGCGTGAACTGGAAAATGGGTGGCGACGATCAAGAAAACGACATCGTGAAACCATCTGGAGCCTGTACTTTCACTATACATGAGATCCAGGAGGAGCGAGTTTCAGTCAACGAATCTGACTCGCTTTAGTTCTTTATGAGTTATGTTACACTGATCAGCATCACGTTCTCCTTGTCTATATTTTACATTGgaacttaaaaacatttatttattaatttattgattgatttatttatttattttaacgaAGAATTGAACACAGACCAAATCAAttaattcatccattaatttcCTTGACAGGCCTATGCATATGTAACCTATGTACGTAAGTTGAAATGATtgttttaagcaatttatttttctAGAAATTTTGGGTGAGGCTGCATACGGGCACACCGAGCCATCACTGTGACGTCACTAGCTCAATTAAGTGCATTTGTGTCTGACAGGTAAAATCGTTGTATCCTCCTCCTATACAAACGCAATAAATCTATTTCTACACGGAAAAAAATGCTCCAAAgcattttctgtaatttatattgac
>TCONS_00018521
ATTCTCCCTCAAAGTGGCAATCAATCAAATTCAACAGGTGACTACTCCCTTCCTCTGCCGGACATCATGCAGAGTGAGGCCTCCAACCCCTATGTGTCCATACGCCGCCACAAGAGCACCACAGATCTGCCATACAGCCCACAGCGTGGGTACTTGCGTGGACAGAGAACTAGTATCTGCGCCCCCACCGAGGCCGAGCTGGCAATGATGAGGCGTTGCTCTTTACGTGATCCGAACGTTCGTCCATGTTGCCGACATGCTCTTAGCGTTCCCAATATGACCAGTCCAAGCGCTAGCCCTCTGTACAGCACCCCATCCCGCAGTGCTCACTGCACTCCTGTACGGGAAGTGGAGTGCAATGCTAAAGCCCGCAATAAGCTAATTGAAAACGAGAGCGTGCAAACTCCCACATGCCCACCAGAGATTCGCCAGCAGCGTCGCTACGTCTCAAAAGATGGGAAATGCCGAGTAGACTTGGCACACATGGCAGAAAAGGAGCGATTTCTGGCAGACATCTTCACTTCGTTTGTGGACCTCCAgtatagatggtttctgtttgtatTCATGATGTGCTACACGGTCACTTGGTTTATATTCGCAGGGCTTTATTCGCTAAATGCTTTTCTGCGTGGAGATCTTGAACATCCTGCGGACACTGATGTTTGCTTCCAAAATATAGATGGATTTGTTTCAGCGTTGCTCTTTTCAGTGGAAACACAGAGGACTATTGGTTATGGCGCTCGTACAGTCTCACCACGCTGCTATGAAGGTGTGTTTTTAGTCATGGCACAATGTATTGTGGGATCCATGATTGACGCTCTAATGGTGGGCTGCATGTTTGTTAAAATCTCACGTCCTAAGAAGCGAGCCGAAACACTTCTTTTTAGTCGGACTTGTGTTGTGGCCAATCGGGATGACCGTCTCTGCCTTATGTTTCGTCTTGGAGACTTGCGTGAGAGTCACATGGTTGACGCCAAAGTACGTGCTAAACTCATCAAGTCTCGGCAGACATCGGAAGGGGAATTTCTCCCACTGGAGCAATCGGAGATCGACCTGGGCTATGAGAGCGGCTCTGACCGACTGTTTCTAGTGGAGCCGCAAGTGATTCAACACATCATTGATTCCAGCAGTCCTTTCTGGGAGCTCGGGCCAGAGAAGCTGCGGAAGCAACAGTTTGAAATTATTGTCATCTTGGAGGGCATAGTGGAAGCTACAGGAATGATGTGCCAGGCCAAGACGTCCTACATCGAGACGGAGATCGAGTGGGGTGCCCGTTTTGAGCCGTGCATGACTTTGGAGAAGGGCTCGTTCCGGGTGGACCTGCGGCGCTTCCACAGCACATATCCAGTGCCGCTGCCGCCGTGCAGCGCTCAGGACACGCATCACCTGCTGGAGCTCCAGGACTCTCTGAAAGACTGCGTGAACTGGAAAATGGGTGGCGACGATCAAGAAAACGACATCGTGAAACCATCTGGAGCCTGTACTTTCACTATACATGAGATCCAGGAGGAGCGAGTTTCAGTCAACGAATCTGACTCGCTT

Function

symbol description
si:ch211-113j13.2 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-162 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000040701

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018520 False 2176 mRNA 0.47 4 37419552 37436082
TCONS_00018521 True 1542 mRNA 0.51 2 37419970 37425468

Neighbor

gene id symbol gene type direction distance location
XLOC_009422 CR848749.2 coding downstream 155287 37259354 ~ 37264265 (-)
XLOC_009421 zmp:0000001114 coding downstream 315387 37022018 ~ 37104165 (-)
XLOC_009418 nphs1 coding downstream 479897 36553823 ~ 36939655 (-)
XLOC_009420 AL953844.1 coding downstream 545186 36874251 ~ 36874366 (-)
XLOC_009419 NA coding downstream 634779 36784479 ~ 36784773 (-)
XLOC_009424 kmt2bb coding upstream 20927 37457009 ~ 37543839 (-)
XLOC_009425 proser3 coding upstream 126500 37562582 ~ 37589600 (-)
XLOC_009426 si:dkey-42l23.9 coding upstream 172660 37608742 ~ 37610434 (-)
XLOC_009427 si:ch211-137j23.8 coding upstream 182922 37619004 ~ 37620167 (-)
XLOC_009428 si:ch211-137j23.7 coding upstream 203102 37639184 ~ 37645814 (-)
XLOC_009416 NA non-coding downstream 916363 36500206 ~ 36503189 (-)
XLOC_009415 NA non-coding downstream 981706 36421591 ~ 36437846 (-)
XLOC_009432 CR848836.1 non-coding upstream 291752 37727834 ~ 37729166 (-)
XLOC_009444 CR944667.3 non-coding upstream 440634 37876716 ~ 37880887 (-)
XLOC_009453 NA non-coding upstream 860075 38296157 ~ 38297734 (-)
XLOC_009455 NA non-coding upstream 989466 38425548 ~ 38425845 (-)
XLOC_009456 NA non-coding upstream 1111745 38547827 ~ 38550804 (-)

Expression


Co-expression Network