Gene
RNA
| Item | Value |
|---|---|
| gene id | G197824 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 6571335 ~ 6571550 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: CCR4-NOT transcription complex subunit 1 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU224541 | True | 216 | lncRNA | 0.44 | 1 | 6571335 | 6571550 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_06553680_06556870 | NA | coding | upstream | 13610 | 6552326 ~ 6557725 (+) |
| CI01000046_06489840_06506540 | TUBG1, TUBG1.L, TUBG2 | coding | upstream | 63728 | 6489620 ~ 6507607 (+) |
| CI01000046_06465424_06470835 | SCPEP1 | coding | upstream | 100341 | 6465424 ~ 6470994 (+) |
| CI01000046_06362326_06364947 | NA | coding | upstream | 206251 | 6361790 ~ 6371457 (+) |
| CI01000046_06330849_06347081 | CRLF3 | coding | upstream | 223956 | 6330849 ~ 6347379 (+) |
| CI01000046_06586111_06594100 | CNTNAP1 | coding | downstream | 14561 | 6586111 ~ 6594182 (+) |
| CI01000046_06605188_06611590 | SLC16A6B | coding | downstream | 33638 | 6605188 ~ 6611714 (+) |
| CI01000046_06617493_06617792 | NA | coding | downstream | 45943 | 6617493 ~ 6618531 (+) |
| CI01000046_06653842_06661599 | NA | coding | downstream | 82292 | 6653842 ~ 6661648 (+) |
| CI01000046_06754054_06769901 | NA | coding | downstream | 182504 | 6754054 ~ 6770272 (+) |
| G197822 | NA | non-coding | upstream | 1468 | 6569600 ~ 6569867 (+) |
| G197721 | NA | non-coding | upstream | 88337 | 6482106 ~ 6482998 (+) |
| G197718 | NA | non-coding | upstream | 92002 | 6478948 ~ 6479333 (+) |
| G197719 | NA | non-coding | upstream | 94624 | 6476302 ~ 6476711 (+) |
| G197717 | NA | non-coding | upstream | 102452 | 6468501 ~ 6468883 (+) |
| G197826 | NA | non-coding | downstream | 3014 | 6574564 ~ 6574773 (+) |
| G197827 | NA | non-coding | downstream | 3979 | 6575529 ~ 6575797 (+) |
| G197755 | NA | non-coding | downstream | 102110 | 6673660 ~ 6675496 (+) |
| G197875 | NA | non-coding | downstream | 214368 | 6785918 ~ 6786281 (+) |
| G197881 | NA | non-coding | downstream | 253448 | 6824998 ~ 6825219 (+) |
| G197528 | NA | other | upstream | 828651 | 5726121 ~ 5742684 (+) |
| G197352 | NA | other | upstream | 1294882 | 5259318 ~ 5276453 (+) |
| G196869 | NA | other | upstream | 2149648 | 4415530 ~ 4421687 (+) |
| G197121 | NA | other | upstream | 2199905 | 4371011 ~ 4371430 (+) |
| G197055 | NA | other | upstream | 2421555 | 4149423 ~ 4149780 (+) |
| CI01000046_06808895_06820945 | GSPT1, ERF3B, GSPT1L | other | downstream | 248388 | 6808507 ~ 6821543 (+) |
