G197787


Basic Information

Item Value
gene id G197787
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 6899287 ~ 6900498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224504
AAAAATATATACAAATACAAATAAAACAATGCTATATATTTTTTTCCCAGGTAGGTCTAATAGTAGTAAGTAAAAATACCACAGAAATTGAATAATCAAATATAAAATAACTCTGCATAGTCATAACTGTATAAATTAAATATAGATTAATCCTTATTAAAGCTTTTCTTTTGTTGTTTGATTATCATTTATAATACAGACATCCAATAGTAGACAGTAGCATGTTTTAAAGGCTGCTGTCACTAAGACCTAATGGACGGAGACAATATGCTGTTACACATGCTGTTCACATTCACATAACCAACGCGAATATACGCCAAGACGGGCATTTTGACATAACTGTGTGTGTATTTGAACGTTTATGTGTAATAAACCGCGAAAATCTATGTGTGTGCGCTTTGGTCGAGAGCGCACTGACTGAAGACCGTCTCTCAGAGAGCGCGCGCAGTTTTTTCTCTCTAGGACATAGCTTAGATTTTACTGTAATGTTCTTGCCTACCTGTGTCGAAAAAGTGAAGTAATTGGAATATTTTCATGCTGAAAAACAGCCACTCGCTTCTGCCGACATCTTCAGACAGCGACTACACAGCTAACTGGTGCGAAGTTGCGAACTCACGAGCAACTCCACTACAGCTAACGATTTTAAAGAGGCAGCGTTCACTTTTACCTTTAGACGACAAATTTAAATTTTAAATTCAATATTGATTTAAACAGAACTGTTGAACTAATTTACAGTATGTAACGCAAATACATTATAACTGTAATTAAATTACCTAAAAATGAACAGTAATCCCTTACTTTACTTTTTCAGTGGATAAGTAATTTAATTATAGTAACGCGTTACACCCAACACTGGTCAGAAACTATTATAGTAAATGTCCTCACGGTTCATGCTGTGGTGCATTTTACATAGTTTGACAACTCTTAAATGAGCTCTGAAAATTATTCTCTGGCTAAATCAGTGGTCTTGACACATATTTCTCCTATTATAAGACAACCTCATCTCCTCAAAGAATACCAAAAGTATCAGTTGCTTTCAGAAACTGGTGTGTATGCAGATGATTTACAGGAACTGGGAGCCCAAAGGCAAAAGACTTAGTCATGATGATGAGCCCTTGTTCTTTTCAGAGGGTTTCAGAGGTTCAGACTAAATTTCCCTTAAGACAGTACCAGTGACTGTCTGTACAACAAAAGCTATTTAATTTGAATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224504 True 1212 lncRNA 0.35 1 6899287 6900498

Neighbor

gene id symbol gene type direction distance location
CI01000046_06850660_06870302 ABCC1 coding upstream 28949 6850660 ~ 6870338 (+)
CI01000046_06827772_06830465 NDE1 coding upstream 68822 6826520 ~ 6830465 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L coding upstream 77744 6808507 ~ 6821543 (+)
CI01000046_06794525_06807060 PDXDC1 coding upstream 92135 6794525 ~ 6807152 (+)
CI01000046_06754054_06769901 NA coding upstream 129015 6754054 ~ 6770272 (+)
CI01000046_06920689_06937254 EZH1 coding downstream 20191 6920689 ~ 6938362 (+)
CI01000046_06980879_06985344 PRKAR1A.S, PRKAR1AA, PRKAR1AB, PRKAR1A, PRKAR1B.S coding downstream 79413 6979911 ~ 6986604 (+)
CI01000046_06989298_06993467 RAC3B, RAC3, RAC3A, RAC1, RAC1A, RAC1B, RAC3.S, RAC1.L coding downstream 88800 6989298 ~ 6994143 (+)
CI01000046_06997249_07006121 NA coding downstream 96751 6997249 ~ 7006274 (+)
CI01000046_07037314_07046456 CSNK1DB, CSNK1D coding downstream 136816 7037314 ~ 7046586 (+)
G197781 NA non-coding upstream 1269 6892149 ~ 6898018 (+)
G197888 NA non-coding upstream 18056 6863250 ~ 6881231 (+)
G197885 NA non-coding upstream 58023 6840835 ~ 6841264 (+)
G197881 NA non-coding upstream 74068 6824998 ~ 6825219 (+)
G197875 NA non-coding upstream 113006 6785918 ~ 6786281 (+)
G197784 NA non-coding downstream 46820 6947318 ~ 6950043 (+)
G197792 NA non-coding downstream 50588 6951086 ~ 6951544 (+)
G197528 NA other upstream 1156603 5726121 ~ 5742684 (+)
G197352 NA other upstream 1622834 5259318 ~ 5276453 (+)
G196869 NA other upstream 2477600 4415530 ~ 4421687 (+)
G197121 NA other upstream 2527857 4371011 ~ 4371430 (+)

Expression


Co-expression Network